Merge pull request #96 from Plant-Food-Research-Open/fix/gt

Fixed cds_length_distribution bug
Plant-Food-Research-Open · Jul 18, 2024 · 6a30a98 · 6a30a98
2 parents 0974e6a + 891d9d2
commit 6a30a98
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
+1. Fixed a bug where `intron_length_distribution` was used instead of `cds_length_distribution` when creating the CDS Length Distribution Graph [#95](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/95)
+
 ### `Dependencies`
 
 1. NextFlow!>=23.04.0

diff --git a/bin/report_modules/parsers/genometools_gt_stat_parser.py b/bin/report_modules/parsers/genometools_gt_stat_parser.py
@@ -82,7 +82,7 @@ def parse_genometools_gt_stat_folder(folder_name="genometools_gt_stat"):
         cds_length_distribution_graph = ""
         if cds_length_distribution != []:
             cds_length_distribution_graph = create_dist_graph(
-                intron_length_distribution,
+                cds_length_distribution,
                 "Length",
                 "CDS Length Distribution",
                 f"./{folder_name}/{os.path.basename(report_path)}.cds.length.png",