Added text/html as content mime type for the report file

CHANGELOG.md

@@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 2. Updated nf-core/template to 3.0.1 [#149](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/149)
 3. Updated `samtools faidx` to 1.21
 4. Now using nf-test for pipeline level testing [#153](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/153)
+5. Added `text/html` as content mime type for the report file [#146](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/146)
 
 ### `Fixed`
 

conf/modules.config

@@ -387,9 +387,18 @@ process {
 
     withName: '.*:ASSEMBLYQC:CREATEREPORT' {
         publishDir = [
-            path: { "$params.outdir" },
-            mode: params.publish_dir_mode,
-            saveAs: { filename -> filename.equals("versions.yml") ? null : filename }
+            [
+                path: { "$params.outdir" },
+                mode: params.publish_dir_mode,
+                pattern: 'report.json',
+                contentType: 'application/json'
+            ],
+            [
+                path: { "$params.outdir" },
+                mode: params.publish_dir_mode,
+                pattern: 'report.html',
+                contentType: 'text/html'
+            ]
         ]
     }
 }