Back to pull request #3237

Misc fixes found when running package checks on newer releases of R #5283

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Run time

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Job	Run time
test (4.2)	9m 22s
sipnet (4.2)	10m 40s
test (4.1)	10m 27s
check (check_base, 4.2)	7m 19s
sipnet (4.1)	10m 30s
check (check_base, 4.1)	7m 20s
check (check_modules, 4.2)	13m 56s
check (check_modules, 4.1)	13m 30s
check (check_models, 4.2)	7m 53s
check (check_models, 4.1)	8m 41s
	1h 39m 38s