update bridgedb

PathVisio · Oct 3, 2024 · 10d28c4 · 10d28c4
1 parent 50b44a6
commit 10d28c4
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Showing 16 changed files with 7 additions and 3 deletions.
diff --git a/lib/org.bridgedb-3.1.4-SNAPSHOT.jar b/lib/org.bridgedb-3.1.4-SNAPSHOT.jar
diff --git a/lib/org.bridgedb.bio-3.1.4-SNAPSHOT.jar b/lib/org.bridgedb.bio-3.1.4-SNAPSHOT.jar
diff --git a/lib/org.bridgedb.bio.jar b/lib/org.bridgedb.bio.jar
diff --git a/lib/org.bridgedb.gui-3.1.4-SNAPSHOT.jar b/lib/org.bridgedb.gui-3.1.4-SNAPSHOT.jar
diff --git a/lib/org.bridgedb.gui.jar b/lib/org.bridgedb.gui.jar
diff --git a/lib/org.bridgedb.jar b/lib/org.bridgedb.jar
diff --git a/lib/org.bridgedb.rdb-3.1.4-SNAPSHOT.jar b/lib/org.bridgedb.rdb-3.1.4-SNAPSHOT.jar
diff --git a/lib/org.bridgedb.rdb.construct-3.1.4-SNAPSHOT.jar b/lib/org.bridgedb.rdb.construct-3.1.4-SNAPSHOT.jar
diff --git a/lib/org.bridgedb.rdb.construct.jar b/lib/org.bridgedb.rdb.construct.jar
diff --git a/lib/org.bridgedb.rdb.jar b/lib/org.bridgedb.rdb.jar
diff --git a/lib/org.bridgedb.webservice.bridgerest-3.1.4-SNAPSHOT.jar b/lib/org.bridgedb.webservice.bridgerest-3.1.4-SNAPSHOT.jar
diff --git a/lib/org.bridgedb.webservice.bridgerest.jar b/lib/org.bridgedb.webservice.bridgerest.jar
diff --git a/modules/org.pathvisio.core/META-INF/MANIFEST.MF b/modules/org.pathvisio.core/META-INF/MANIFEST.MF
@@ -38,7 +38,8 @@ Require-Bundle: com.springsource.org.jdom;bundle-version="2.0.1",
  org.w3c.dom.events;bundle-version="3.0.0",
  org.w3c.dom.smil;bundle-version="1.0.1",
  org.w3c.dom.svg;bundle-version="1.1.0",
- derby;bundle-version="10.14.2000000"
+ derby;bundle-version="10.14.2000000",
+ derbyclient;bundle-version="10.14.2000000"
 Import-Package: javax.swing,
  org.osgi.framework;version="1.5.0"
 Bundle-License: http://www.apache.org/licenses/LICENSE-2.0

diff --git a/modules/org.pathvisio.desktop/META-INF/MANIFEST.MF b/modules/org.pathvisio.desktop/META-INF/MANIFEST.MF
@@ -47,6 +47,7 @@ Require-Bundle: org.pathvisio.core;bundle-version="3.4.0",
  org.w3c.dom.smil;bundle-version="1.0.1",
  org.w3c.dom.svg;bundle-version="1.1.0",
  org.apache.felix.bundlerepository;bundle-version="1.6.6",
+ derbyclient;bundle-version="10.14.2000000",
  derby;bundle-version="10.14.2000000"
 Import-Package: javax.swing,
  org.osgi.framework;version="1.5.0"

diff --git a/modules/org.pathvisio.gex/META-INF/MANIFEST.MF b/modules/org.pathvisio.gex/META-INF/MANIFEST.MF
@@ -16,7 +16,9 @@ Require-Bundle: org.pathvisio.core;bundle-version="3.4.0",
  org.bridgedb.bio,
  org.bridgedb.rdb,
  org.bridgedb.rdb.construct,
- org.bridgedb.gui
+ org.bridgedb.gui,
+ derby;bundle-version="10.14.2000000",
+ derbyclient;bundle-version="10.14.2000000"
 Import-Package: org.osgi.framework;version="1.3.0"
 Bundle-Copyright: 2006-2019 BiGCaT Bioinformatics
 Bundle-DocURL: http://www.pathvisio.org

diff --git a/modules/org.pathvisio.gui/src/org/pathvisio/gui/DataSourceModel.java b/modules/org.pathvisio.gui/src/org/pathvisio/gui/DataSourceModel.java
@@ -115,7 +115,7 @@ private void initItems()
 	{
 		items = new ArrayList<DataSource>();
 		items.addAll(DataSourceHandler.getFilteredSetAlt(primary, type, organism, interaction));
-		items.remove(DataSource.getExistingBySystemCode("En"));
+//		items.remove(DataSource.getExistingBySystemCode("En"));
 
 		Collections.sort (items, new Comparator<DataSource>()
 		{