Coverage-report now uses less restricted file-names #1871
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| --- | |
| name: CI pipeline for pySDC | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '1 5 * * 1' | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| env: | |
| YML: 'etc/environment-lint.yml' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{ env.YML }} | |
| create-args: >- | |
| python=3.10 | |
| - name: Code reformatting with black | |
| run: | | |
| black pySDC --check --diff --color | |
| - name: Linting with flakeheaven | |
| run: | | |
| flakeheaven lint --benchmark pySDC | |
| user_cpu_tests_linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| env: ['base', 'fenics', 'mpi4py', 'petsc', 'pytorch'] | |
| python: ['3.9', '3.10', '3.11', '3.12'] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: "etc/environment-${{ matrix.env }}.yml" | |
| create-args: >- | |
| python=${{ matrix.python }} | |
| - name: Install additional packages as needed | |
| run: | | |
| micromamba install -y --file etc/environment-tests.yml --freeze-installed | |
| - name: Run pytest for CPU stuff | |
| run: | | |
| echo "print('Loading sitecustomize.py...') | |
| import coverage | |
| coverage.process_startup() " > sitecustomize.py | |
| coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/tests -m ${{ matrix.env }} | |
| - name: Make coverage report | |
| run: | | |
| coverage combine | |
| mv .coverage coverage_${{ matrix.env }}.dat | |
| - name: Uploading artifacts | |
| uses: actions/upload-artifact@v4 | |
| if: matrix.python == '3.12' | |
| with: | |
| name: test-artifacts-cpu-${{ matrix.env }} | |
| path: | | |
| data | |
| coverage_${{ matrix.env }}.dat | |
| project_cpu_tests_linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| env: | |
| - AllenCahn_Bayreuth | |
| - AsympConv | |
| - DAE | |
| - FastWaveSlowWave | |
| - Hamiltonian | |
| - matrixPFASST | |
| - parallelSDC | |
| - parallelSDC_reloaded | |
| - PinTSimE | |
| - RDC | |
| - Resilience | |
| - SDC_showdown | |
| - Second_orderSDC | |
| - soft_failure | |
| - TOMS | |
| python: ['3.9', '3.10', '3.11', '3.12'] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: "pySDC/projects/${{ matrix.env }}/environment.yml" | |
| create-args: >- | |
| python=${{ matrix.python }} | |
| - name: Install additional packages as needed | |
| run: | | |
| micromamba install -y --file etc/environment-tests.yml --freeze-installed | |
| - name: Run pytest for CPU stuff | |
| run: | | |
| echo "print('Loading sitecustomize.py...') | |
| import coverage | |
| coverage.process_startup() " > sitecustomize.py | |
| coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/${{ matrix.env }}/tests | |
| - name: Make coverage report | |
| run: | | |
| coverage combine | |
| mv .coverage coverage_${{ matrix.env }}.dat | |
| - name: Uploading artifacts | |
| uses: actions/upload-artifact@v4 | |
| if: matrix.python == '3.12' | |
| with: | |
| name: test-artifacts-project-${{ matrix.env }} | |
| path: | | |
| data | |
| coverage_${{ matrix.env }}.dat | |
| user_libpressio_tests: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: brownbaerchen/libpressio:amd64_2 | |
| volumes: | |
| - ${{ github.workspace }}:/pySDC | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install pySDC and pytest | |
| run: | | |
| source /pySDC/pySDC/projects/compression/Docker/install_pySDC.sh | |
| - name: Run pytest | |
| run: | | |
| source /opt/spack/share/spack/setup-env.sh | |
| spack load libpressio | |
| coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/compression/tests -m libpressio | |
| - name: Make coverage report | |
| run: | | |
| source /opt/spack/share/spack/setup-env.sh | |
| spack load libpressio | |
| mv data data_libpressio | |
| coverage combine | |
| mv .coverage coverage_libpressio.dat | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-artifacts-libpressio | |
| path: | | |
| data_libpressio | |
| coverage_libpressio.dat | |
| user_monodomain_tests_linux: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: "pySDC/projects/Monodomain/etc/environment-monodomain.yml" | |
| create-args: >- | |
| python=3.12 | |
| - name: Compile C++ ionic models | |
| env: | |
| IONIC_MODELS_PATH: "pySDC/projects/Monodomain/problem_classes/ionicmodels/cpp" | |
| run: > | |
| c++ -O3 -Wall -shared -std=c++11 -fPIC -fvisibility=hidden | |
| $(python3 -m pybind11 --includes) | |
| ${IONIC_MODELS_PATH}/bindings_definitions.cpp | |
| -o ${IONIC_MODELS_PATH}/ionicmodels$(python3-config --extension-suffix) | |
| - name: Run pytest for CPU stuff | |
| run: | | |
| echo "print('Loading sitecustomize.py...') | |
| import coverage | |
| coverage.process_startup() " > sitecustomize.py | |
| coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/Monodomain/tests -m monodomain | |
| - name: Make coverage report | |
| run: | | |
| mv data data_monodomain | |
| coverage combine | |
| mv .coverage coverage_monodomain.dat | |
| - name: Uploading artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-artifacts-monodomain | |
| path: | | |
| data_monodomain | |
| coverage_monodomain.dat |