Github action: bump up PnetCDF and MPICH versions #54
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| name: Stacking Log, Cache, Async VOLs | |
| on: | |
| push: | |
| branches: [ master ] | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| pull_request: | |
| branches: [ master ] | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| env: | |
| MPICH_VERSION: 4.1.1 | |
| ARGOBOTS_VERSION: 1.1 | |
| ASYNC_VOL_VERSION: 1.8.1 | |
| HDF5_VERSION: 1.14.2 | |
| LOG_VOL_VERSION: 1.4.0 | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up dependencies | |
| run: | | |
| set -x | |
| sudo apt-get update | |
| sudo apt-get -y install automake autoconf libtool libtool-bin m4 cmake | |
| # The MPICH installed on github actions is too slow | |
| # sudo apt-get install mpich | |
| # mpicc -v | |
| # zlib | |
| sudo apt-get -y install zlib1g-dev | |
| - name: Add global env variables into GITHUB_ENV | |
| run: | | |
| set -x | |
| echo "MPICH_DIR=${GITHUB_WORKSPACE}/MPICH" >> $GITHUB_ENV | |
| echo "HDF5_ROOT=${GITHUB_WORKSPACE}/HDF5" >> $GITHUB_ENV | |
| echo "ABT_DIR=${GITHUB_WORKSPACE}/Argobots" >> $GITHUB_ENV | |
| echo "ASYNC_DIR=${GITHUB_WORKSPACE}/Async" >> $GITHUB_ENV | |
| echo "HDF5_ASYNC_DISABLE_IMPLICIT_NON_DSET_RW=1" >> $GITHUB_ENV | |
| echo "CACHE_DIR=${GITHUB_WORKSPACE}/Cache" >> $GITHUB_ENV | |
| echo "LOGVOL_DIR=${GITHUB_WORKSPACE}/LOGVOL" >> $GITHUB_ENV | |
| echo "HDF5_PLUGIN_PATH=${GITHUB_WORKSPACE}/LOGVOL/lib:${GITHUB_WORKSPACE}/Cache/lib:${GITHUB_WORKSPACE}/Async/lib" >> $GITHUB_ENV | |
| echo "MPICH_MAX_THREAD_SAFETY=multiple" >> $GITHUB_ENV | |
| echo "HDF5_USE_FILE_LOCKING=FALSE" >> $GITHUB_ENV | |
| echo "HDF5_ASYNC_DISABLE_DSET_GET=0" >> $GITHUB_ENV | |
| # Start async execution at file close time | |
| echo "HDF5_ASYNC_EXE_FCLOSE=1" >> $GITHUB_ENV | |
| # Start async execution at group close time | |
| echo "HDF5_ASYNC_EXE_GCLOSE=1" >> $GITHUB_ENV | |
| # Start async execution at dataset close time | |
| echo "HDF5_ASYNC_EXE_DCLOSE=1" >> $GITHUB_ENV | |
| - name: Build MPICH ${{ env.MPICH_VERSION }} | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ${MPICH_DIR} ; mkdir ${MPICH_DIR} ; cd ${MPICH_DIR} | |
| curl -LO https://www.mpich.org/static/downloads/${MPICH_VERSION}/mpich-${MPICH_VERSION}.tar.gz | |
| gzip -dc mpich-${MPICH_VERSION}.tar.gz | tar -xf - | |
| cd mpich-${MPICH_VERSION} | |
| ./configure --prefix=${MPICH_DIR} \ | |
| --silent \ | |
| --enable-romio \ | |
| --with-file-system=ufs \ | |
| --with-device=ch3:sock \ | |
| --disable-fortran \ | |
| CC=gcc | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s -j 8 distclean >> qout 2>&1 | |
| - name: Dump MPICH log file | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${MPICH_DIR}/mpich-${MPICH_VERSION}/qout | |
| cat ${MPICH_DIR}/mpich-${MPICH_VERSION}/config.log | |
| - name: Install HDF5 ${{ env.HDF5_VERSION }} | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ${HDF5_ROOT} ; mkdir ${HDF5_ROOT} ; cd ${HDF5_ROOT} | |
| VER_MAJOR=${HDF5_VERSION%.*} | |
| VER_NOPATCH=${HDF5_VERSION%-*} # remove patch version | |
| curl -LO https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${VER_MAJOR}/hdf5-${VER_NOPATCH}/src/hdf5-${HDF5_VERSION}.tar.gz | |
| tar -zxf hdf5-${HDF5_VERSION}.tar.gz | |
| cd hdf5-${HDF5_VERSION} | |
| ./configure --prefix=${HDF5_ROOT} \ | |
| --silent \ | |
| --enable-parallel \ | |
| --enable-build-mode=production \ | |
| --enable-unsupported \ | |
| --enable-threadsafe \ | |
| --disable-doxygen-doc \ | |
| --disable-doxygen-man \ | |
| --disable-doxygen-html \ | |
| --disable-tests \ | |
| --disable-fortran \ | |
| --disable-cxx \ | |
| CC=${MPICH_DIR}/bin/mpicc | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s -j 8 distclean >> qout 2>&1 | |
| - name: Dump config.log file if build HDF5 failed | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat ${HDF5_ROOT}/hdf5-${HDF5_VERSION}/qout | |
| cat ${HDF5_ROOT}/hdf5-${HDF5_VERSION}/config.log | |
| - name: Install Argobots ${{ env.ARGOBOTS_VERSION }} | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ${ABT_DIR} ; mkdir ${ABT_DIR} ; cd ${ABT_DIR} | |
| curl -LO https://github.com/pmodels/argobots/archive/refs/tags/v${ARGOBOTS_VERSION}.tar.gz | |
| tar -xf v${ARGOBOTS_VERSION}.tar.gz | |
| cd argobots-${ARGOBOTS_VERSION} | |
| ./autogen.sh | |
| ./configure --prefix=${ABT_DIR} \ | |
| --silent \ | |
| CC=${MPICH_DIR}/bin/mpicc \ | |
| CXX=${MPICH_DIR}/bin/mpicxx | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s -j 8 distclean >> qout 2>&1 | |
| - name: Dump config.log file if build Argobots failed | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat ${ABT_DIR}/argobots-${ARGOBOTS_VERSION}/qout | |
| cat ${ABT_DIR}/argobots-${ARGOBOTS_VERSION}/config.log | |
| - name: Install Async VOL master branch | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ${ASYNC_DIR} ; mkdir ${ASYNC_DIR} ; cd ${ASYNC_DIR} | |
| curl -LO https://github.com/hpc-io/vol-async/archive/refs/tags/v${ASYNC_VOL_VERSION}.tar.gz | |
| tar -xf v${ASYNC_VOL_VERSION}.tar.gz | |
| cd vol-async-${ASYNC_VOL_VERSION} | |
| # git clone https://github.com/hpc-io/vol-async.git | |
| # cd vol-async | |
| mkdir build ; cd build | |
| CC=${MPICH_DIR}/bin/mpicc CXX=${MPICH_DIR}/bin/mpicxx \ | |
| cmake .. -DCMAKE_INSTALL_PREFIX=${ASYNC_DIR} | |
| make -j 8 install > qout 2>&1 | |
| - name: Dump config.log file if build Async VOL failed | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat ${ASYNC_DIR}/build/qout | |
| - name: Install Cache VOL master branch | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ${CACHE_DIR} ; mkdir ${CACHE_DIR} ; cd ${CACHE_DIR} | |
| git clone https://github.com/hpc-io/vol-cache.git | |
| cd vol-cache | |
| mkdir build ; cd build | |
| CC=${MPICH_DIR}/bin/mpicc CXX=${MPICH_DIR}/bin/mpicxx \ | |
| CFLAGS=-DNDEBUG \ | |
| HDF5_VOL_DIR=${ASYNC_DIR} \ | |
| cmake .. -DCMAKE_INSTALL_PREFIX=${CACHE_DIR} | |
| make -j 8 install > qout 2>&1 | |
| - name: Dump config.log file if build Cache VOL failed | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat ${CACHE_DIR}/build/qout | |
| cat ${CACHE_DIR}/build/config.log | |
| - name: Install Log VOL | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ${LOGVOL_DIR} ; mkdir ${LOGVOL_DIR} ; cd ${LOGVOL_DIR} | |
| curl -LO https://github.com/DataLib-ECP/vol-log-based/archive/refs/tags/logvol.${LOG_VOL_VERSION}.tar.gz | |
| tar -zxf logvol.${LOG_VOL_VERSION}.tar.gz | |
| cd vol-log-based-logvol.${LOG_VOL_VERSION} | |
| autoreconf -i | |
| ./configure --prefix=${LOGVOL_DIR} \ | |
| --silent \ | |
| --with-hdf5=${HDF5_ROOT} \ | |
| --with-mpi=${MPICH_DIR} | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s -j 8 distclean >> qout 2>&1 | |
| - name: Dump config.log file if build Log VOL failed | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat ${LOGVOL_DIR}/vol-log-based-logvol.${LOG_VOL_VERSION}/qout | |
| cat ${LOGVOL_DIR}/vol-log-based-logvol.${LOG_VOL_VERSION}/config.log | |
| - name: Build E3SM_IO with HDF5 and Log VOL | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ./test_output | |
| autoreconf -i | |
| ./configure --with-mpi=${MPICH_DIR} \ | |
| --with-hdf5=${HDF5_ROOT} \ | |
| --with-logvol=${LOGVOL_DIR} \ | |
| --enable-threading \ | |
| CFLAGS=-fno-var-tracking-assignments \ | |
| CXXFLAGS=-fno-var-tracking-assignments | |
| make -j 8 | |
| - name: Print config.log if error | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${GITHUB_WORKSPACE}/config.log | |
| - name: Test Cache and Async VOL - make check | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| export LD_LIBRARY_PATH="${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH}" | |
| export HDF5_VOL_CONNECTOR="cache_ext config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=512;under_info={under_vol=0;under_info={}}" | |
| make -s check | |
| - name: Print log files | |
| if: ${{ always() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat test.sh.log | |
| cat utils/*.log | |
| - name: Test Cache and Async VOL - make ptest | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| export LD_LIBRARY_PATH="${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH}" | |
| export HDF5_VOL_CONNECTOR="cache_ext config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=512;under_info={under_vol=0;under_info={}}" | |
| make -s ptest | |
| - name: Test stacking Log VOL on top of Cache VOL only - make check | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| export LD_LIBRARY_PATH="${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH}" | |
| export HDF5_VOL_CONNECTOR="LOG under_vol=513;under_info={config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=0;under_info={}}" | |
| make -s check | |
| - name: Print log files | |
| if: ${{ always() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat test.sh.log | |
| cat utils/*.log | |
| - name: Test stacking Log VOL on top of Cache VOL only - make ptest | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| export LD_LIBRARY_PATH="${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH}" | |
| export HDF5_VOL_CONNECTOR="LOG under_vol=513;under_info={config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=0;under_info={}}" | |
| make -s ptest | |
| - name: Test stacking Log VOL on top of Cache and Async VOL - make check | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| export LD_LIBRARY_PATH="${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH}" | |
| export HDF5_VOL_CONNECTOR="LOG under_vol=513;under_info={config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=512;under_info={under_vol=0;under_info={}}}" | |
| make -s check | |
| - name: Print log files | |
| if: ${{ always() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat test.sh.log | |
| cat utils/*.log | |
| - name: Test stacking Log VOL on top of Cache and Async VOL - make ptest | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| export LD_LIBRARY_PATH="${LOGVOL_DIR}/lib:${CACHE_DIR}/lib:${ASYNC_DIR}/lib:${ABT_DIR}/lib:${HDF5_ROOT}/lib:${LD_LIBRARY_PATH}" | |
| export HDF5_VOL_CONNECTOR="LOG under_vol=513;under_info={config=${GITHUB_WORKSPACE}/cache.cfg;under_vol=512;under_info={under_vol=0;under_info={}}}" | |
| make -s ptest | |
| - name: make distclean | |
| if: ${{ always() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| make -s distclean | |