PnetCDF driver: fix file open mode for reading decomposition files #10
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| name: PnetCDF master branch only | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - github_action | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| - 'datasets/*' | |
| pull_request: | |
| branches: master | |
| paths-ignore: | |
| - '**/*.md' | |
| - '**/*.txt' | |
| - '**/*.jpg' | |
| - '**/*.png' | |
| - 'tests/*' | |
| - 'datasets/*' | |
| env: | |
| MPICH_VERSION: 4.2.0 | |
| PNETCDF_VERSION: repo | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up dependencies | |
| run: | | |
| set -x | |
| sudo apt-get update | |
| sudo apt-get install automake autoconf libtool libtool-bin m4 | |
| # mpich | |
| # sudo apt-get install mpich | |
| # zlib | |
| sudo apt-get install zlib1g-dev | |
| - name: Build MPICH | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| echo "Install MPICH on ${GITHUB_WORKSPACE}/MPICH" | |
| rm -rf MPICH ; mkdir MPICH ; cd MPICH | |
| # git clone -q https://github.com/pmodels/mpich.git | |
| # cd mpich | |
| # git submodule update --init | |
| # ./autogen.sh | |
| curl -LO https://www.mpich.org/static/downloads/${MPICH_VERSION}/mpich-${MPICH_VERSION}.tar.gz | |
| gzip -dc mpich-${MPICH_VERSION}.tar.gz | tar -xf - | |
| cd mpich-${MPICH_VERSION} | |
| ./configure --prefix=${GITHUB_WORKSPACE}/MPICH \ | |
| --silent \ | |
| --enable-romio \ | |
| --with-file-system=ufs \ | |
| --with-device=ch3:sock \ | |
| --disable-fortran \ | |
| CC=gcc | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s distclean >> qout 2>&1 | |
| - name: Dump MPICH log file | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${GITHUB_WORKSPACE}/MPICH/mpich-${MPICH_VERSION}/qout | |
| cat ${GITHUB_WORKSPACE}/MPICH/mpich-${MPICH_VERSION}/config.log | |
| - name: Install PnetCDF | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| echo "Install PnetCDF on ${GITHUB_WORKSPACE}/PnetCDF" | |
| rm -rf PnetCDF ; mkdir PnetCDF ; cd PnetCDF | |
| # curl -LO https://parallel-netcdf.github.io/Release/pnetcdf-${PNETCDF_VERSION}.tar.gz | |
| # tar -zxf pnetcdf-${PNETCDF_VERSION}.tar.gz | |
| # cd pnetcdf-${PNETCDF_VERSION} | |
| git clone -q https://github.com/Parallel-NetCDF/PnetCDF.git | |
| cd PnetCDF | |
| autoreconf -i | |
| ./configure --prefix=${GITHUB_WORKSPACE}/PnetCDF \ | |
| --silent \ | |
| --disable-fortran \ | |
| --disable-cxx \ | |
| --disable-shared \ | |
| --with-mpi=${GITHUB_WORKSPACE}/MPICH | |
| make -s LIBTOOLFLAGS=--silent V=1 -j 8 install > qout 2>&1 | |
| make -s distclean >> qout 2>&1 | |
| - name: Dump PnetCDF log file | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cat ${GITHUB_WORKSPACE}/PnetCDF/pnetcdf-${PNETCDF_VERSION}/qout | |
| cat ${GITHUB_WORKSPACE}/PnetCDF/pnetcdf-${PNETCDF_VERSION}/config.log | |
| - name: Build and check E3SM_IO with PnetCDF only | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| rm -rf ./test_output | |
| autoreconf -i | |
| ./configure --with-pnetcdf=${GITHUB_WORKSPACE}/PnetCDF \ | |
| --with-mpi=${GITHUB_WORKSPACE}/MPICH \ | |
| CFLAGS=-fno-var-tracking-assignments \ | |
| CXXFLAGS=-fno-var-tracking-assignments | |
| make -j 8 | |
| make check | |
| - name: Dump log files if E3SM_IO with PnetCDF-only test failed | |
| if: ${{ failure() }} | |
| run: | | |
| set -x | |
| cd ${GITHUB_WORKSPACE} | |
| cat test.sh.log utils/*.log | |
| - name: Test E3SM_IO all APIs -- parallel runs | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| make ptest | |
| - name: Test make distcheck | |
| if: ${{ success() }} | |
| run: | | |
| set -x | |
| make distcheck DISTCHECK_CONFIGURE_FLAGS="--with-pnetcdf=${GITHUB_WORKSPACE}/PnetCDF --with-mpi=${GITHUB_WORKSPACE}/MPICH CFLAGS=-fno-var-tracking-assignments CXXFLAGS=-fno-var-tracking-assignments" | |
| make distclean | |