replaced argvparser with clipp

ParBLiSS · Apr 28, 2021 · 6531da0 · 6531da0
1 parent 79272cd
commit 6531da0
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Showing 4 changed files with 7,106 additions and 1,309 deletions.
diff --git a/src/cgi/core_genome_identity.cpp b/src/cgi/core_genome_identity.cpp
@@ -19,27 +19,18 @@
 #include "map/include/commonFunc.hpp"
 #include "cgi/include/computeCoreIdentity.hpp" 
 
-//External includes
-#include "common/argvparser.hpp"
-
 int main(int argc, char** argv)
 {
   /*
    * Make sure env variable MALLOC_ARENA_MAX is unset 
    * for efficient multi-threaded execution
    */
   unsetenv((char *)"MALLOC_ARENA_MAX");
-
-  CommandLineProcessing::ArgvParser cmd;
   using namespace std::placeholders;  // for _1, _2, _3...
 
-  //Setup command line options
-  skch::initCmdParser(cmd);
-
   //Parse command line arguements   
   skch::Parameters parameters;        //sketching and mapping parameters
-
-  skch::parseandSave(argc, argv, cmd, parameters);   
+  skch::parseandSave(argc, argv, parameters);
 
   std::string fileName = parameters.outFileName;