This workflow is deprecated and has been replaced by PacificBiosciences/HiFI-human-WGS-WDL.
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This repo contains a data analysis pipeline to comprehensively detect and prioritize variants in human genomes using PacBio HiFi reads. It consists of three Snakemake workflows designed to run sequentially, with PacBio HiFi BAMs or FASTQs as the primary input.
Documentation for the PacBio Human WGS Workflow (snakemake implementation) is available here.
- Juniper Lake (@juniper-lake)
- William Rowell (@williamrowell)
- Aaron Wenger (@amwenger)