Version 3.1.0

Summary of changes:

• Improve PMS2/PMS2CL differentiation
• Output protein changes at five potentially pathogenic sites in OPN1LW/OPN1MW
• Update region definitions for some families
• Add a few regions for fusion calling
  • CYP2D6, GBA, CYP11B1, the CFH gene cluster
• Improve VCFs. See documentation here
  • For each region, all gene copies are now in a single VCF file per sample, reported as sample columns in the VCF.
  • Report boundary coordinates and the truncated status of a haplotype in the VCF.
  • Report groups of haplotypes on the same chromosome when this information is available.