v1.0.1

What's Changed

• fix: Changed submodule URL to relative by @williamrowell in #18
• Merge develop into main to fix submodule clone error by @gconcepcion in #19
• fix: Use pyyaml SafeLoader to suppress deprecation warning. by @williamrowell in #21

Full Changelog: v1.0.0...v1.0.1

v1.0.0

Initial Release of the PacBio Human Assembly Pipeline.

Currently supported:

• Single & Trio samples
• Small variant calling with paftools

What's Changed

• Initial port of pipeline by @hkeward in #1
• Use 2 cores/4 GB RAM base machine size for tasks by @hkeward in #2
• Convert array-based to non-array-based tests by @hkeward in #4
• decrease memory usage for minimap2 alignment by @williamrowell in #3
• Update wdl-ci version by @hkeward in #5
• Avoid underestimating disk size based on first element of array. by @williamrowell in #7
• Document submitting workflow directly to Cromwell using cURL by @hkeward in #8
• Use FASTA file size to estimate depth for yak count parameters. by @williamrowell in #10
• Gconcepcion/yak changes by @gconcepcion in #9
• Added version print statements to all tasks. by @williamrowell in #6
• Develop by @gconcepcion in #13
• feat: Replace parse-cohort image with pyyaml container. by @williamrowell in #16
• Merging develop into main for release by @gconcepcion in #15

New Contributors

• @hkeward made their first contribution in #1
• @williamrowell made their first contribution in #3
• @gconcepcion made their first contribution in #9

Full Changelog: https://github.com/PacificBiosciences/HiFi-human-assembly-WDL/commits/v1.0.0