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Move wdl-common to submodule #14

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merged 4 commits into from
Feb 20, 2024
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2 changes: 1 addition & 1 deletion .gitmodules
Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
[submodule "workflows/wdl-common"]
path = workflows/wdl-common
url = [email protected]:PacificBiosciences/wdl-common.git
url = ../wdl-common.git
27 changes: 0 additions & 27 deletions wdl-ci.config.json
Original file line number Diff line number Diff line change
Expand Up @@ -611,33 +611,6 @@
}
}
},
"workflows/wdl-common/wdl/tasks/pharmcat.wdl": {
"key": "workflows/wdl-common/wdl/tasks/pharmcat.wdl",
"name": "",
"description": "",
"tasks": {
"pangu_cyp2d6": {
"key": "pangu_cyp2d6",
"digest": "",
"tests": []
},
"pharmcat_preprocess": {
"key": "pharmcat_preprocess",
"digest": "",
"tests": []
},
"filter_preprocessed_vcf": {
"key": "filter_preprocessed_vcf",
"digest": "",
"tests": []
},
"run_pharmcat": {
"key": "run_pharmcat",
"digest": "",
"tests": []
}
}
},
"workflows/wdl-common/wdl/tasks/pbsv_discover.wdl": {
"key": "workflows/wdl-common/wdl/tasks/pbsv_discover.wdl",
"name": "",
Expand Down
1 change: 1 addition & 0 deletions workflows/wdl-common
Submodule wdl-common added at 7baa13
34 changes: 0 additions & 34 deletions workflows/wdl-common/LICENSE

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5 changes: 0 additions & 5 deletions workflows/wdl-common/README.md

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22 changes: 0 additions & 22 deletions workflows/wdl-common/wdl/structs.wdl

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52 changes: 0 additions & 52 deletions workflows/wdl-common/wdl/tasks/bcftools_stats.wdl

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70 changes: 0 additions & 70 deletions workflows/wdl-common/wdl/tasks/glnexus.wdl

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50 changes: 0 additions & 50 deletions workflows/wdl-common/wdl/tasks/mosdepth.wdl

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56 changes: 0 additions & 56 deletions workflows/wdl-common/wdl/tasks/pbsv_call.wdl

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49 changes: 0 additions & 49 deletions workflows/wdl-common/wdl/tasks/pbsv_discover.wdl

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