build based on e4b7fd1

PALEOtoolkit · Jun 21, 2024 · 8e84db9 · 8e84db9
1 parent 828d6d4
commit 8e84db9
Show file tree

Hide file tree

Showing 35 changed files with 4,466 additions and 2 deletions.
diff --git a/stable b/stable
@@ -1 +1 @@
-v0.2.0
+v0.4.7
diff --git a/v0.4 b/v0.4
@@ -0,0 +1 @@
+v0.4.7
diff --git a/v0.4.7/.documenter-siteinfo.json b/v0.4.7/.documenter-siteinfo.json
@@ -0,0 +1 @@
+{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-06-21T11:15:06","documenter_version":"1.4.1"}}
diff --git a/v0.4.7/PALEOocean_Domains/index.html b/v0.4.7/PALEOocean_Domains/index.html
diff --git a/v0.4.7/PALEOocean_Reactions/index.html b/v0.4.7/PALEOocean_Reactions/index.html
diff --git a/v0.4.7/PALEOocean_functions/index.html b/v0.4.7/PALEOocean_functions/index.html
diff --git a/v0.4.7/References/index.html b/v0.4.7/References/index.html
@@ -0,0 +1,2 @@
+<!DOCTYPE html>
+<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>References · PALEOocean Documentation</title><meta name="title" content="References · PALEOocean Documentation"/><meta property="og:title" content="References · PALEOocean Documentation"/><meta property="twitter:title" content="References · PALEOocean Documentation"/><meta name="description" content="Documentation for PALEOocean Documentation."/><meta property="og:description" content="Documentation for PALEOocean Documentation."/><meta property="twitter:description" content="Documentation for PALEOocean Documentation."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../assets/documenter.js"></script><script src="../search_index.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../">PALEOocean Documentation</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">PALEOocean.jl documentation</a></li><li><span class="tocitem">Examples and Tutorials</span><ul><li><input class="collapse-toggle" id="menuitem-2-1" type="checkbox"/><label class="tocitem" for="menuitem-2-1"><span class="docs-label">ocean3box</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/ocean3box/README/">3 Box Ocean Examples</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-2" type="checkbox"/><label class="tocitem" for="menuitem-2-2"><span class="docs-label">PTBClarkson2014</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/PTBClarkson2014/README/">PTB land-atmosphere-ocean model (Clarkson 2015)</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-3" type="checkbox"/><label class="tocitem" for="menuitem-2-3"><span class="docs-label">shelf1D</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/shelf1D/README/">1D shelf sea examples and test cases</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-4" type="checkbox"/><label class="tocitem" for="menuitem-2-4"><span class="docs-label">blacksea</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/blacksea/README/">Black Sea intermediate-complexity box model</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-5" type="checkbox"/><label class="tocitem" for="menuitem-2-5"><span class="docs-label">romglb</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/romglb/README/">Intermediate-complexity global ocean</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-6" type="checkbox"/><label class="tocitem" for="menuitem-2-6"><span class="docs-label">mitgcm</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/mitgcm/README/">MITgcm transport matrix ocean-only examples</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-7" type="checkbox"/><label class="tocitem" for="menuitem-2-7"><span class="docs-label">skeleton_configuration</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/skeleton_configuration/README/">Skeleton ocean-atmosphere configuration</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-8" type="checkbox"/><label class="tocitem" for="menuitem-2-8"><span class="docs-label">transport_examples</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/transport_examples/README/">Transport examples</a></li></ul></li></ul></li><li><span class="tocitem">Design</span><ul><li><a class="tocitem" href="../PALEOocean_Domains/">PALEOocean Domains, fluxes, and standard Variables</a></li></ul></li><li><span class="tocitem">Reference</span><ul><li><a class="tocitem" href="../PALEOocean_Reactions/">PALEOocean Reactions</a></li><li><a class="tocitem" href="../PALEOocean_functions/">PALEOocean functions</a></li></ul></li><li class="is-active"><a class="tocitem" href>References</a></li><li><a class="tocitem" href="../indexpage/">Index</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>References</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>References</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOocean.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOocean.jl/blob/main/docs/src/References.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="References"><a class="docs-heading-anchor" href="#References">References</a><a id="References-1"></a><a class="docs-heading-anchor-permalink" href="#References" title="Permalink"></a></h1><div class="citation canonical"><ul><li><div id="Brock1981">Brock, T. D. (1981). <em>Calculating solar radiation for ecological studies</em>. <a href="https://doi.org/10.1016/0304-3800(81)90011-9">Ecological Modelling <strong>14</strong>, 1–19</a>.</div></li><li><div id="Caldeira1993">Caldeira, K. and Rampino, M. R. (1993). <a href="http://doi.wiley.com/10.1029/93PA01163"><em>Aftermath of the end-Cretaceous mass extinction: Possible biogeochemical stabilization of the carbon cycle and climate</em></a>. <a href="https://doi.org/10.1029/93PA01163">Paleoceanography <strong>8</strong>, 515–525</a>.</div></li><li><div id="Canfield2006">Canfield, D. E. (2006). <a href="http://linkinghub.elsevier.com/retrieve/pii/S0016703706019120"><em>Models of oxic respiration, denitrification and sulfate reduction in zones of coastal upwelling</em></a>. <a href="https://doi.org/10.1016/j.gca.2006.07.023">Geochimica et Cosmochimica Acta <strong>70</strong>, 5753–5765</a>.</div></li><li><div id="Clarkson2015">Clarkson, M. O.; Kasemann, S. A.; Wood, R. A.; Lenton, T. M.; Daines, S. J.; Richoz, S.; Ohnemueller, F.; Meixner, A.; Poulton, S. W. and Tipper, E. T. (2015). <a href="https://www.sciencemag.org/lookup/doi/10.1126/science.aaa0193"><em>Ocean acidification and the Permo-Triassic mass extinction</em></a>. <a href="https://doi.org/10.1126/science.aaa0193">Science <strong>348</strong>, 229–232</a>.</div></li><li><div id="Daines2016">Daines, S. J. and Lenton, T. M. (2016). <a href="http://linkinghub.elsevier.com/retrieve/pii/S0012821X15007256"><em>The effect of widespread early aerobic marine ecosystems on methane cycling and the Great Oxidation</em></a>. <a href="https://doi.org/10.1016/j.epsl.2015.11.021">Earth and Planetary Science Letters <strong>434</strong>, 42–51</a>.</div></li><li><div id="Fennel2005">Fennel, K. (2005). <a href="http://www.ajsonline.org/cgi/doi/10.2475/ajs.305.6-8.526"><em>The co-evolution of the nitrogen, carbon and oxygen cycles in the Proterozoic ocean</em></a>. <a href="https://doi.org/10.2475/ajs.305.6-8.526">American Journal of Science <strong>305</strong>, 526–545</a>.</div></li><li><div id="Geider1987">Geider, R. J. (1987). <a href="http://doi.wiley.com/10.1111/j.1469-8137.1987.tb04788.x"><em>LIGHT AND TEMPERATURE DEPENDENCE OF THE CARBON TO CHLOROPHYLL a RATIO IN MICROALGAE AND CYANOBACTERIA: IMPLICATIONS FOR PHYSIOLOGY AND GROWTH OF PHYTOPLANKTON</em></a>. <a href="https://doi.org/10.1111/j.1469-8137.1987.tb04788.x">New Phytologist <strong>106</strong>, 1–34</a>.</div></li><li><div id="Hotinski2000">Hotinski, R. M.; Kump, L. R. and Najjar, R. G. (2000). <a href="http://www.agu.org/pubs/crossref/2000/1999PA000408.shtml"><em>Opening Pandora&#39;s Box: The impact of open system modeling on interpretations of anoxia</em></a>. <a href="https://doi.org/10.1029/1999PA000408">Paleoceanography <strong>15</strong>, 267</a>.</div></li><li><div id="Khatiwala2007">Khatiwala, S. (2007). <a href="http://www.agu.org/pubs/crossref/2007/2007GB002923.shtml"><em>A computational framework for simulation of biogeochemical tracers in the ocean</em></a>. <a href="https://doi.org/10.1029/2007GB002923">Global Biogeochemical Cycles <strong>21</strong>, 1–14</a>.</div></li><li><div id="Kriest2010">Kriest, I.; Khatiwala, S. and Oschlies, A. (2010). <a href="http://dx.doi.org/10.1016/j.pocean.2010.05.002"><em>Towards an assessment of simple global marine biogeochemical models of different complexity</em></a>. <a href="https://doi.org/10.1016/j.pocean.2010.05.002">Progress in Oceanography <strong>86</strong>, 337–360</a>. ISBN: 0079-6611 Publisher: Elsevier Ltd.</div></li><li><div id="Ridgwell2007">Ridgwell, A.; Hargreaves, J. C.; Edwards, N. R.; Annan, J. D.; Lenton, T. M.; Marsh, R.; Yool, A. and Watson, A. (2007). <a href="https://bg.copernicus.org/articles/4/87/2007/"><em>Marine geochemical data assimilation in an efficient Earth System Model of global biogeochemical cycling</em></a>. <a href="https://doi.org/10.5194/bg-4-87-2007">Biogeosciences <strong>4</strong>, 87–104</a>.</div></li><li><div id="Romaniello2010">Romaniello, S. J. and Derry, L. A. (2010). <em>An intermediate-complexity model for simulating marine biogeochemistry in deep time: Validation against the modern global ocean</em>. <a href="https://doi.org/10.1029/2009GC002711">Geochemistry Geophysics Geosystems <strong>11</strong>, 1–33</a>.</div></li><li><div id="Romaniello2010a">Romaniello, S. J. and Derry, L. A. (2010). <em>Validation of an intermediate-complexity model for simulating marine biogeochemistry under anoxic conditions in the modern Black Sea</em>. <a href="https://doi.org/10.1029/2009GC002712">Geochemistry Geophysics Geosystems <strong>11</strong>, 1–18</a>.</div></li><li><div id="Sarmiento1984">Sarmiento, J. L. and Toggweiler, J. R. (1984). <a href="http://www.nature.com/articles/308621a0"><em>A new model for the role of the oceans in determining atmospheric P CO2</em></a>. <a href="https://doi.org/10.1038/308621a0">Nature <strong>308</strong>, 621–624</a>.</div></li><li><div id="SarmientoGruber2006">Sarmiento, J. L. and Gruber, N. (2006). <em>Ocean biogeochemical dynamics</em> (Princeton University Press, Princeton). OCLC: ocm60651167.</div></li><li><div id="Toggweiler1985">Toggweiler, J. R. and Sarmiento, J. L. (1985). <a href="http://doi.wiley.com/10.1029/GM032p0163"><em>Glacial to Interglacial Changes in Atmospheric Carbon Dioxide: The Critical Role of Ocean Surface Water in High Latitudes</em></a>. In: <a href="https://doi.org/10.1029/GM032p0163"><em>The Carbon cycle and atmospheric CO2: Natural variations Archean to present.</em></a>, Vol. 1 (Wiley); pp. 163–184.</div></li><li><div id="Wanninkhof1992">Wanninkhof, R. (1992). <a href="http://www.agu.org/pubs/crossref/1992/92JC00188.shtml"><em>Relationship Between Wind Speed and Gas Exchange Over the Ocean</em></a>. <a href="https://doi.org/10.1029/92JC00188">Journal of Geophysical Research <strong>97</strong>, 7373–7382</a>.</div></li><li><div id="Watson1995">Watson, A. J. (1995). <em>Are upwelling zones sources or sinks of CO2?</em> In: <em>Upwelling in the ocean: Modern processes and ancient records</em>, edited by Summerhayes, C. (Wiley); pp. 321–336.</div></li><li><div id="Zhang1995">Zhang, J.; Quay, P. and Wilbur, D. (1995). <a href="http://linkinghub.elsevier.com/retrieve/pii/001670379591550D"><em>Carbon isotope fractionation during gas-water exchange and dissolution of CO2</em></a>. <a href="https://doi.org/10.1016/0016-7037(95)91550-D">Geochimica et Cosmochimica Acta <strong>59</strong>, 107–114</a>.</div></li></ul></div></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../PALEOocean_functions/">« PALEOocean functions</a><a class="docs-footer-nextpage" href="../indexpage/">Index »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Friday 21 June 2024 11:15">Friday 21 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-06-21T11:15:06","documenter_version":"1.4.1"}}
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		<!DOCTYPE html>
		<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>References · PALEOocean Documentation</title><meta name="title" content="References · PALEOocean Documentation"/><meta property="og:title" content="References · PALEOocean Documentation"/><meta property="twitter:title" content="References · PALEOocean Documentation"/><meta name="description" content="Documentation for PALEOocean Documentation."/><meta property="og:description" content="Documentation for PALEOocean Documentation."/><meta property="twitter:description" content="Documentation for PALEOocean Documentation."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/fontawesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/solid.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.4.2/css/brands.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/KaTeX/0.16.8/katex.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.6/require.min.js" data-main="../assets/documenter.js"></script><script src="../search_index.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-dark.css" data-theme-name="documenter-dark" data-theme-primary-dark/><link class="docs-theme-link" rel="stylesheet" type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../">PALEOocean Documentation</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">PALEOocean.jl documentation</a></li><li><span class="tocitem">Examples and Tutorials</span><ul><li><input class="collapse-toggle" id="menuitem-2-1" type="checkbox"/><label class="tocitem" for="menuitem-2-1"><span class="docs-label">ocean3box</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/ocean3box/README/">3 Box Ocean Examples</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-2" type="checkbox"/><label class="tocitem" for="menuitem-2-2"><span class="docs-label">PTBClarkson2014</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/PTBClarkson2014/README/">PTB land-atmosphere-ocean model (Clarkson 2015)</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-3" type="checkbox"/><label class="tocitem" for="menuitem-2-3"><span class="docs-label">shelf1D</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/shelf1D/README/">1D shelf sea examples and test cases</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-4" type="checkbox"/><label class="tocitem" for="menuitem-2-4"><span class="docs-label">blacksea</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/blacksea/README/">Black Sea intermediate-complexity box model</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-5" type="checkbox"/><label class="tocitem" for="menuitem-2-5"><span class="docs-label">romglb</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/romglb/README/">Intermediate-complexity global ocean</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-6" type="checkbox"/><label class="tocitem" for="menuitem-2-6"><span class="docs-label">mitgcm</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/mitgcm/README/">MITgcm transport matrix ocean-only examples</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-7" type="checkbox"/><label class="tocitem" for="menuitem-2-7"><span class="docs-label">skeleton_configuration</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/skeleton_configuration/README/">Skeleton ocean-atmosphere configuration</a></li></ul></li><li><input class="collapse-toggle" id="menuitem-2-8" type="checkbox"/><label class="tocitem" for="menuitem-2-8"><span class="docs-label">transport_examples</span><i class="docs-chevron"></i></label><ul class="collapsed"><li><a class="tocitem" href="../collated_examples/transport_examples/README/">Transport examples</a></li></ul></li></ul></li><li><span class="tocitem">Design</span><ul><li><a class="tocitem" href="../PALEOocean_Domains/">PALEOocean Domains, fluxes, and standard Variables</a></li></ul></li><li><span class="tocitem">Reference</span><ul><li><a class="tocitem" href="../PALEOocean_Reactions/">PALEOocean Reactions</a></li><li><a class="tocitem" href="../PALEOocean_functions/">PALEOocean functions</a></li></ul></li><li class="is-active"><a class="tocitem" href>References</a></li><li><a class="tocitem" href="../indexpage/">Index</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>References</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>References</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOocean.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOocean.jl/blob/main/docs/src/References.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="References"><a class="docs-heading-anchor" href="#References">References</a><a id="References-1"></a><a class="docs-heading-anchor-permalink" href="#References" title="Permalink"></a></h1><div class="citation canonical"><ul><li><div id="Brock1981">Brock, T. D. (1981). <em>Calculating solar radiation for ecological studies</em>. <a href="https://doi.org/10.1016/0304-3800(81)90011-9">Ecological Modelling <strong>14</strong>, 1–19</a>.</div></li><li><div id="Caldeira1993">Caldeira, K. and Rampino, M. R. (1993). <a href="http://doi.wiley.com/10.1029/93PA01163"><em>Aftermath of the end-Cretaceous mass extinction: Possible biogeochemical stabilization of the carbon cycle and climate</em></a>. <a href="https://doi.org/10.1029/93PA01163">Paleoceanography <strong>8</strong>, 515–525</a>.</div></li><li><div id="Canfield2006">Canfield, D. E. (2006). <a href="http://linkinghub.elsevier.com/retrieve/pii/S0016703706019120"><em>Models of oxic respiration, denitrification and sulfate reduction in zones of coastal upwelling</em></a>. <a href="https://doi.org/10.1016/j.gca.2006.07.023">Geochimica et Cosmochimica Acta <strong>70</strong>, 5753–5765</a>.</div></li><li><div id="Clarkson2015">Clarkson, M. O.; Kasemann, S. A.; Wood, R. A.; Lenton, T. M.; Daines, S. J.; Richoz, S.; Ohnemueller, F.; Meixner, A.; Poulton, S. W. and Tipper, E. T. (2015). <a href="https://www.sciencemag.org/lookup/doi/10.1126/science.aaa0193"><em>Ocean acidification and the Permo-Triassic mass extinction</em></a>. <a href="https://doi.org/10.1126/science.aaa0193">Science <strong>348</strong>, 229–232</a>.</div></li><li><div id="Daines2016">Daines, S. J. and Lenton, T. M. (2016). <a href="http://linkinghub.elsevier.com/retrieve/pii/S0012821X15007256"><em>The effect of widespread early aerobic marine ecosystems on methane cycling and the Great Oxidation</em></a>. <a href="https://doi.org/10.1016/j.epsl.2015.11.021">Earth and Planetary Science Letters <strong>434</strong>, 42–51</a>.</div></li><li><div id="Fennel2005">Fennel, K. (2005). <a href="http://www.ajsonline.org/cgi/doi/10.2475/ajs.305.6-8.526"><em>The co-evolution of the nitrogen, carbon and oxygen cycles in the Proterozoic ocean</em></a>. <a href="https://doi.org/10.2475/ajs.305.6-8.526">American Journal of Science <strong>305</strong>, 526–545</a>.</div></li><li><div id="Geider1987">Geider, R. J. (1987). <a href="http://doi.wiley.com/10.1111/j.1469-8137.1987.tb04788.x"><em>LIGHT AND TEMPERATURE DEPENDENCE OF THE CARBON TO CHLOROPHYLL a RATIO IN MICROALGAE AND CYANOBACTERIA: IMPLICATIONS FOR PHYSIOLOGY AND GROWTH OF PHYTOPLANKTON</em></a>. <a href="https://doi.org/10.1111/j.1469-8137.1987.tb04788.x">New Phytologist <strong>106</strong>, 1–34</a>.</div></li><li><div id="Hotinski2000">Hotinski, R. M.; Kump, L. R. and Najjar, R. G. (2000). <a href="http://www.agu.org/pubs/crossref/2000/1999PA000408.shtml"><em>Opening Pandora's Box: The impact of open system modeling on interpretations of anoxia</em></a>. <a href="https://doi.org/10.1029/1999PA000408">Paleoceanography <strong>15</strong>, 267</a>.</div></li><li><div id="Khatiwala2007">Khatiwala, S. (2007). <a href="http://www.agu.org/pubs/crossref/2007/2007GB002923.shtml"><em>A computational framework for simulation of biogeochemical tracers in the ocean</em></a>. <a href="https://doi.org/10.1029/2007GB002923">Global Biogeochemical Cycles <strong>21</strong>, 1–14</a>.</div></li><li><div id="Kriest2010">Kriest, I.; Khatiwala, S. and Oschlies, A. (2010). <a href="http://dx.doi.org/10.1016/j.pocean.2010.05.002"><em>Towards an assessment of simple global marine biogeochemical models of different complexity</em></a>. <a href="https://doi.org/10.1016/j.pocean.2010.05.002">Progress in Oceanography <strong>86</strong>, 337–360</a>. ISBN: 0079-6611 Publisher: Elsevier Ltd.</div></li><li><div id="Ridgwell2007">Ridgwell, A.; Hargreaves, J. C.; Edwards, N. R.; Annan, J. D.; Lenton, T. M.; Marsh, R.; Yool, A. and Watson, A. (2007). <a href="https://bg.copernicus.org/articles/4/87/2007/"><em>Marine geochemical data assimilation in an efficient Earth System Model of global biogeochemical cycling</em></a>. <a href="https://doi.org/10.5194/bg-4-87-2007">Biogeosciences <strong>4</strong>, 87–104</a>.</div></li><li><div id="Romaniello2010">Romaniello, S. J. and Derry, L. A. (2010). <em>An intermediate-complexity model for simulating marine biogeochemistry in deep time: Validation against the modern global ocean</em>. <a href="https://doi.org/10.1029/2009GC002711">Geochemistry Geophysics Geosystems <strong>11</strong>, 1–33</a>.</div></li><li><div id="Romaniello2010a">Romaniello, S. J. and Derry, L. A. (2010). <em>Validation of an intermediate-complexity model for simulating marine biogeochemistry under anoxic conditions in the modern Black Sea</em>. <a href="https://doi.org/10.1029/2009GC002712">Geochemistry Geophysics Geosystems <strong>11</strong>, 1–18</a>.</div></li><li><div id="Sarmiento1984">Sarmiento, J. L. and Toggweiler, J. R. (1984). <a href="http://www.nature.com/articles/308621a0"><em>A new model for the role of the oceans in determining atmospheric P CO2</em></a>. <a href="https://doi.org/10.1038/308621a0">Nature <strong>308</strong>, 621–624</a>.</div></li><li><div id="SarmientoGruber2006">Sarmiento, J. L. and Gruber, N. (2006). <em>Ocean biogeochemical dynamics</em> (Princeton University Press, Princeton). OCLC: ocm60651167.</div></li><li><div id="Toggweiler1985">Toggweiler, J. R. and Sarmiento, J. L. (1985). <a href="http://doi.wiley.com/10.1029/GM032p0163"><em>Glacial to Interglacial Changes in Atmospheric Carbon Dioxide: The Critical Role of Ocean Surface Water in High Latitudes</em></a>. In: <a href="https://doi.org/10.1029/GM032p0163"><em>The Carbon cycle and atmospheric CO2: Natural variations Archean to present.</em></a>, Vol. 1 (Wiley); pp. 163–184.</div></li><li><div id="Wanninkhof1992">Wanninkhof, R. (1992). <a href="http://www.agu.org/pubs/crossref/1992/92JC00188.shtml"><em>Relationship Between Wind Speed and Gas Exchange Over the Ocean</em></a>. <a href="https://doi.org/10.1029/92JC00188">Journal of Geophysical Research <strong>97</strong>, 7373–7382</a>.</div></li><li><div id="Watson1995">Watson, A. J. (1995). <em>Are upwelling zones sources or sinks of CO2?</em> In: <em>Upwelling in the ocean: Modern processes and ancient records</em>, edited by Summerhayes, C. (Wiley); pp. 321–336.</div></li><li><div id="Zhang1995">Zhang, J.; Quay, P. and Wilbur, D. (1995). <a href="http://linkinghub.elsevier.com/retrieve/pii/001670379591550D"><em>Carbon isotope fractionation during gas-water exchange and dissolution of CO2</em></a>. <a href="https://doi.org/10.1016/0016-7037(95)91550-D">Geochimica et Cosmochimica Acta <strong>59</strong>, 107–114</a>.</div></li></ul></div></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../PALEOocean_functions/">« PALEOocean functions</a><a class="docs-footer-nextpage" href="../indexpage/">Index »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.4.1 on <span class="colophon-date" title="Friday 21 June 2024 11:15">Friday 21 June 2024</span>. Using Julia version 1.10.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>