build based on 705fe41

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.6.7","generation_timestamp":"2024-12-30T19:26:43","documenter_version":"1.8.0"}}
+{"documenter":{"julia_version":"1.6.7","generation_timestamp":"2024-12-30T19:28:41","documenter_version":"1.8.0"}}

dev/ExampleCOPSEreloaded/index.html

@@ -11,4 +11,4 @@
 pCO2atm_6C = PALEOmodel.get_array(paleorun.output, "atm.pCO2atm")   # get FieldArray
 plot!(1e6*pCO2atm_6C, label="6C", ylabel="pCO2 (1e-6 atm)") # plot x1e6
 plot!(xlim=(-600e6, 0), ylim=(0, 4000))  # rescale axes</code></pre><h2 id="Jupyter-notebook-version"><a class="docs-heading-anchor" href="#Jupyter-notebook-version">Jupyter notebook version</a><a id="Jupyter-notebook-version-1"></a><a class="docs-heading-anchor-permalink" href="#Jupyter-notebook-version" title="Permalink"></a></h2><p>The same content as above (with additional examples) is available as the Jupyter notebook <code>COPSE_reloaded_reloaded.ipynb</code>.</p><p>To start Jupyter from within the Julia REPL:</p><pre><code class="nohighlight hljs">julia&gt; using IJulia
-julia&gt; notebook(dir=pwd(), detached=true)</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« PALEOcopse.jl documentation</a><a class="docs-footer-nextpage" href="../COPSE_Domains/">PALEO COPSE Domains »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Monday 30 December 2024 19:26">Monday 30 December 2024</span>. Using Julia version 1.6.7.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+julia&gt; notebook(dir=pwd(), detached=true)</code></pre></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../">« PALEOcopse.jl documentation</a><a class="docs-footer-nextpage" href="../COPSE_Domains/">PALEO COPSE Domains »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Monday 30 December 2024 19:28">Monday 30 December 2024</span>. Using Julia version 1.6.7.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>

dev/index.html

@@ -5,4 +5,4 @@
 julia> Pkg.activate("..") # use the PALEOcopse/examples environment
 
 julia&gt; include(&quot;COPSE_reloaded_reloaded.jl&quot;)</code></pre><h2 id="Evaluation-data"><a class="docs-heading-anchor" href="#Evaluation-data">Evaluation data</a><a id="Evaluation-data-1"></a><a class="docs-heading-anchor-permalink" href="#Evaluation-data" title="Permalink"></a></h2><p>Datasets are not part of the public release but are available on request from the authors.</p><h2 id="Using-PALEOcopse-Reactions-from-other-models"><a class="docs-heading-anchor" href="#Using-PALEOcopse-Reactions-from-other-models">Using PALEOcopse Reactions from other models</a><a id="Using-PALEOcopse-Reactions-from-other-models-1"></a><a class="docs-heading-anchor-permalink" href="#Using-PALEOcopse-Reactions-from-other-models" title="Permalink"></a></h2><p>The PALEO Reactions comprising the COPSE model are available when the registered PALEOcopse package is loaded (without downloading the repository), ie</p><pre><code class="nohighlight hljs">julia&gt; Pkg.add(&quot;PALEOcopse&quot;)
-julia&gt; import PALEOcopse</code></pre></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="ExampleCOPSEreloaded/">COPSE Reloaded »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Monday 30 December 2024 19:26">Monday 30 December 2024</span>. Using Julia version 1.6.7.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+julia&gt; import PALEOcopse</code></pre></article><nav class="docs-footer"><a class="docs-footer-nextpage" href="ExampleCOPSEreloaded/">COPSE Reloaded »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Monday 30 December 2024 19:28">Monday 30 December 2024</span>. Using Julia version 1.6.7.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>