Add iron-sulphur chemistry

docs/src/PALEOaqchem Reactions.md

@@ -23,6 +23,17 @@ Remin.ReactionReminO2_SO4_CH4
 SecondaryRedox.ReactionRedoxH2S_O2
 SecondaryRedox.ReactionRedoxCH4_O2
 SecondaryRedox.ReactionRedoxCH4_SO4
+SecondaryRedox.ReactionRedoxFeII_O2
+SecondaryRedox.ReactionRedoxFeIII_H2S
+SecondaryRedox.ReactionRedoxFeS_O2
+SecondaryRedox.ReactionRedoxFeS2pyr_O2
+```
+
+## Iron-sulphur system
+```@docs
+FeS.ReactionFeSaq
+FeS.ReactionFeSm
+FeS.ReactionPyrH2S
 ```
 
 ## Carbonate chemistry

docs/src/paleoaqchem_references.bib

@@ -7,6 +7,18 @@ @book{Boudreau1997
 year = {1997}
 }
 
+@article{Dale2015,
+author = {Dale, Andrew W. and Nickelsen, L. and Scholz, F. and Hensen, C. and Oschlies, A. and Wallmann, K.},
+doi = {10.1002/2014GB005017},
+journal = {Global Biogeochemical Cycles},
+month = {may},
+number = {5},
+pages = {691--707},
+title = {{A revised global estimate of dissolved iron fluxes from marine sediments}},
+volume = {29},
+year = {2015}
+}
+
 @techreport{Lewis1998,
 author = {Lewis, E. and Wallace, D. W. R},
 institution = {Carbon Dioxide Inf.  Anal. Cent., Oak Ridge Natl. Lab., Oak Ridge, Tenn.},
@@ -24,44 +36,103 @@ @article{Ozaki2011
 pages = {270--279},
 publisher = {Elsevier B.V.},
 title = {{Conditions required for oceanic anoxia/euxinia: Constraints from a one-dimensional ocean biogeochemical cycle model}},
-url = {http://linkinghub.elsevier.com/retrieve/pii/S0012821X11000823},
 volume = {304},
 year = {2011}
 }
 
+
+@article{rickard_solubility_2006,
+	title = {The solubility of {FeS}},
+	volume = {70},
+	issn = {00167037},
+	doi = {10.1016/j.gca.2006.02.029},
+	number = {23},
+	journal = {Geochimica et Cosmochimica Acta},
+	author = {Rickard, David},
+	month = dec,
+	year = {2006},
+	pages = {5779--5789},
+}
+
+
+@article{rickard_chemistry_2007,
+	title = {Chemistry of iron sulfides.},
+	volume = {107},
+	issn = {0009-2665},
+	doi = {10.1021/cr0503658},
+	number = {2},
+	journal = {Chemical reviews},
+	author = {Rickard, David and Luther, George W},
+	month = mar,
+	year = {2007},
+	pmid = {17261073},
+	note = {ISBN: 2920874284},
+	pages = {514--62},
+}
+
+
 @article{Romaniello2010a,
-author = {Romaniello, Stephen J. and Derry, Louis A},
-doi = {10.1029/2009GC002712},
-journal = {Geochemistry Geophysics Geosystems},
-month = {aug},
-number = {8},
-pages = {1--18},
-title = {{Validation of an intermediate-complexity model for simulating marine biogeochemistry under anoxic conditions in the modern Black Sea}},
-url = {http://www.agu.org/pubs/crossref/2010/2009GC002712.shtml},
-volume = {11},
-year = {2010}
+    author = {Romaniello, Stephen J. and Derry, Louis A},
+    doi = {10.1029/2009GC002712},
+    journal = {Geochemistry Geophysics Geosystems},
+    month = {aug},
+    number = {8},
+    pages = {1--18},
+    title = {{Validation of an intermediate-complexity model for simulating marine biogeochemistry under anoxic conditions in the modern Black Sea}},
+    volume = {11},
+    year = {2010}
 }
 
 @article{VanCappellen1996a,
-author = {{Van Cappellen}, Philippe and Wang, Y.},
-doi = {10.2475/ajs.296.3.197},
-journal = {American Journal of Science},
-month = {mar},
-number = {3},
-pages = {197--243},
-title = {{Cycling of iron and manganese in surface sediments; a general theory for the coupled transport and reaction of carbon, oxygen, nitrogen, sulfur, iron, and manganese}},
-url = {http://www.ajsonline.org/cgi/doi/10.2475/ajs.296.3.197},
-volume = {296},
-year = {1996}
+    author = {{Van Cappellen}, Philippe and Wang, Y.},
+    doi = {10.2475/ajs.296.3.197},
+    journal = {American Journal of Science},
+    month = {mar},
+    number = {3},
+    pages = {197--243},
+    title = {{Cycling of iron and manganese in surface sediments; a general theory for the coupled transport and reaction of carbon, oxygen, nitrogen, sulfur, iron, and manganese}},
+    volume = {296},
+    year = {1996}
 }
 
 @techreport{VanHeuven2011,
-author = {van Heuven, S. and Pierrot, D. and Rae, J.W.B. and Lewis, E. and Wallace, D.W.R.},
-institution = {Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee.},
-title = {MATLAB Program Developed for CO2 System Calculations. ORNL/CDIAC-105b},
-doi = {10.3334/CDIAC/otg.CO2SYS_MATLAB_v1.1},
-url = {https://cdiac.ess-dive.lbl.gov/ftp/co2sys/CO2SYS_calc_MATLAB_v1.1/},
-year = {2011},
+    author = {van Heuven, S. and Pierrot, D. and Rae, J.W.B. and Lewis, E. and Wallace, D.W.R.},
+    institution = {Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee.},
+    title = {MATLAB Program Developed for CO2 System Calculations. ORNL/CDIAC-105b},
+    doi = {10.3334/CDIAC/otg.CO2SYS_MATLAB_v1.1},
+    url = {https://cdiac.ess-dive.lbl.gov/ftp/co2sys/CO2SYS_calc_MATLAB_v1.1/},
+    year = {2011},
+}
+
+
+@article{van_de_velde_2016,
+	title = {The {Influence} of {Bioturbation} on {Iron} and {Sulphur} {Cycling} in {Marine} {Sediments}: {A} {Model} {Analysis}},
+	volume = {22},
+	issn = {1380-6165, 1573-1421},
+	shorttitle = {The {Influence} of {Bioturbation} on {Iron} and {Sulphur} {Cycling} in {Marine} {Sediments}},
+	doi = {10.1007/s10498-016-9301-7},
+	language = {en},
+	number = {5-6},
+	journal = {Aquatic Geochemistry},
+	author = {Van De Velde, Sebastiaan and Meysman, Filip J. R.},
+	month = dec,
+	year = {2016},
+	keywords = {fe, sediments, sulphur},
+	pages = {469--504},
+}
+
+@article{van_de_velde_iron_2021,
+	title = {Iron and sulfur cycling in the {cGENIE}.muffin {Earth} system model (v0.9.21)},
+	volume = {14},
+	issn = {1991-9603},
+	doi = {10.5194/gmd-14-2713-2021},
+	language = {en},
+	number = {5},
+	journal = {Geoscientific Model Development},
+	author = {Van De Velde, Sebastiaan J. and Hülse, Dominik and Reinhard, Christopher T. and Ridgwell, Andy},
+	month = may,
+	year = {2021},
+	pages = {2713--2745},
 }
 
 @book{Zeebe2001,