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| <html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Molecular diffusivity · PALEOaqchem Documentation</title><meta name="title" content="Molecular diffusivity · PALEOaqchem Documentation"/><meta property="og:title" content="Molecular diffusivity · PALEOaqchem Documentation"/><meta property="twitter:title" content="Molecular diffusivity · PALEOaqchem Documentation"/><meta name="description" content="Documentation for PALEOaqchem Documentation."/><meta property="og:description" content="Documentation for PALEOaqchem Documentation."/><meta property="twitter:description" content="Documentation for PALEOaqchem Documentation."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" 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is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">PALEOaqchem.jl</a></li><li><span class="tocitem">Reference</span><ul><li><a class="tocitem" href="../Organic matter and remineralization/">Organic matter and remineralization</a></li><li><a class="tocitem" href="../Generic Chemistry/">Generic Chemistry</a></li><li><a class="tocitem" href="../Secondary Redox/">Secondary redox</a></li><li><a class="tocitem" href="../Carbonate chemistry/">Carbonate chemistry</a></li><li class="is-active"><a class="tocitem" href>Molecular diffusivity</a></li><li><a class="tocitem" href="../Isotopes/">Isotope systems</a></li><li><a class="tocitem" href="../functions/">PALEOaqchem functions</a></li></ul></li><li><a class="tocitem" href="../References/">References</a></li><li><a class="tocitem" href="../indexpage/">Index</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li><a class="is-disabled">Reference</a></li><li class="is-active"><a href>Molecular diffusivity</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Molecular diffusivity</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOaqchem.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOaqchem.jl/blob/main/docs/src/Molecular Diffusivity.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Molecular-diffusivity"><a class="docs-heading-anchor" href="#Molecular-diffusivity">Molecular diffusivity</a><a id="Molecular-diffusivity-1"></a><a class="docs-heading-anchor-permalink" href="#Molecular-diffusivity" title="Permalink"></a></h1><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="PALEOaqchem.MolecularDiffusion.create_solute_diffusivity_func" href="#PALEOaqchem.MolecularDiffusion.create_solute_diffusivity_func"><code>PALEOaqchem.MolecularDiffusion.create_solute_diffusivity_func</code></a> — <span class="docstring-category">Function</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">create_solute_diffusivity_func(species_or_constant::AbstractString) -> f_diffcoeff</code></pre><p>Molecular diffusivity for <code>species_or_constant</code> in water</p><p>Based on data compiled by (<a href="../References/#Boudreau1997">Boudreau, 1997</a>) Ch. 4</p><p>If <code>species_or_constant</code> is a species name, returns a function <code>f_diffcoeff</code>, which calculates:</p><pre><code class="nohighlight hljs">f_diffcoeff(TdegK, Pbar, S) -> Dmol (cm^2/s)</code></pre><p>If <code>species_or_constant</code> can be parsed into a <code>Float64</code>, returns a function which provides this constant value (units cm^2/s).</p><p>The effect of pressure and salinity is approximated by assuming viscosity (calculated by <a href="#PALEOaqchem.MolecularDiffusion.sw_dynamic_viscosity"><code>MolecularDiffusion.sw_dynamic_viscosity</code></a>) is the primary consideration, (<a href="../References/#Boudreau1997">Boudreau, 1997</a>) eqn. 4.107 and Table 4.10.</p><p><strong>Example</strong></p><p>To test from the Julia REPL:</p><pre><code class="nohighlight hljs">julia> PALEOaqchem.MolecularDiffusion.create_solute_diffusivity_func("O2")(273.15+25, 1.0, 35) | ||
| 2.211824368650775e-5</code></pre></div><a class="docs-sourcelink" target="_blank" href="https://github.com/PALEOtoolkit/PALEOaqchem.jl/blob/53b4158d6e0f51a353089dcff8d1bbfc4e16395e/src/MolecularDiffusion.jl#L6-L30">source</a></section></article><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="PALEOaqchem.MolecularDiffusion.sw_dynamic_viscosity" href="#PALEOaqchem.MolecularDiffusion.sw_dynamic_viscosity"><code>PALEOaqchem.MolecularDiffusion.sw_dynamic_viscosity</code></a> — <span class="docstring-category">Function</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">sw_dynamic_viscosity(TdegC, Pbar, S) -> mu</code></pre><p>Seawater dynamic viscosity ((<a href="../References/#Boudreau1997">Boudreau, 1997</a>) p94) 'claimed to accurate to within 7% over T (0 - 30C), P (1 - 1000 bar), S (0 36)'</p><p>Returns <code>mu (10^-2 g/cm/s) (centipoise)</code></p><p><strong>Arguments:</strong></p><ul><li><code>T</code>: deg C (0 - 30C) temperature </li><li><code>P</code>: bar (1 1000) pressure</li><li><code>S</code>: salinity (0 - 36)</li></ul><p>See check values for salinity effect Table 4.10 p.125</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/PALEOtoolkit/PALEOaqchem.jl/blob/53b4158d6e0f51a353089dcff8d1bbfc4e16395e/src/MolecularDiffusion.jl#L123-L137">source</a></section></article><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="PALEOaqchem.MolecularDiffusion.ReactionAqMolecularDiffusion" href="#PALEOaqchem.MolecularDiffusion.ReactionAqMolecularDiffusion"><code>PALEOaqchem.MolecularDiffusion.ReactionAqMolecularDiffusion</code></a> — <span class="docstring-category">Type</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">ReactionAqMolecularDiffusion</code></pre><p>Calculate molecular diffusivity from <code>:diffusivity_speciesname</code> attributes of aqueous solution concentration Variables</p><p><code>:diffusivity_speciesname</code> may either be a known species (in which case it is looked up in <a href="#PALEOaqchem.MolecularDiffusion.create_solute_diffusivity_func"><code>create_solute_diffusivity_func</code></a>), or a constant value in <code>cm^2 s-1</code> supplied as a String.</p></div><a class="docs-sourcelink" target="_blank" href="https://github.com/PALEOtoolkit/PALEOaqchem.jl/blob/53b4158d6e0f51a353089dcff8d1bbfc4e16395e/src/MolecularDiffusion.jl#L280-L287">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Carbonate chemistry/">« Carbonate chemistry</a><a class="docs-footer-nextpage" href="../Isotopes/">Isotope systems »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Saturday 30 November 2024 19:14">Saturday 30 November 2024</span>. Using Julia version 1.6.7.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html> |
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