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<!DOCTYPE html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Isotope systems · PALEOaqchem Documentation</title><meta name="title" content="Isotope systems · PALEOaqchem Documentation"/><meta property="og:title" content="Isotope systems · PALEOaqchem Documentation"/><meta property="twitter:title" content="Isotope systems · PALEOaqchem Documentation"/><meta name="description" content="Documentation for PALEOaqchem Documentation."/><meta property="og:description" content="Documentation for PALEOaqchem Documentation."/><meta property="twitter:description" content="Documentation for PALEOaqchem Documentation."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link 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my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">PALEOaqchem.jl</a></li><li><span class="tocitem">Reference</span><ul><li><a class="tocitem" href="../Organic matter and remineralization/">Organic matter and remineralization</a></li><li><a class="tocitem" href="../Generic Chemistry/">Generic Chemistry</a></li><li><a class="tocitem" href="../Secondary Redox/">Secondary redox</a></li><li><a class="tocitem" href="../Carbonate chemistry/">Carbonate chemistry</a></li><li class="is-active"><a class="tocitem" href>Isotope systems</a><ul class="internal"><li><a class="tocitem" href="#Boron"><span>Boron</span></a></li></ul></li><li><a class="tocitem" href="../functions/">PALEOaqchem functions</a></li></ul></li><li><a class="tocitem" href="../References/">References</a></li><li><a class="tocitem" href="../indexpage/">Index</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li><a class="is-disabled">Reference</a></li><li class="is-active"><a href>Isotope systems</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Isotope systems</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOaqchem.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/PALEOtoolkit/PALEOaqchem.jl/blob/main/docs/src/Isotopes.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Isotope-systems"><a class="docs-heading-anchor" href="#Isotope-systems">Isotope systems</a><a id="Isotope-systems-1"></a><a class="docs-heading-anchor-permalink" href="#Isotope-systems" title="Permalink"></a></h1><h2 id="Boron"><a class="docs-heading-anchor" href="#Boron">Boron</a><a id="Boron-1"></a><a class="docs-heading-anchor-permalink" href="#Boron" title="Permalink"></a></h2><article class="docstring"><header><a class="docstring-article-toggle-button fa-solid fa-chevron-down" href="javascript:;" title="Collapse docstring"></a><a class="docstring-binding" id="PALEOaqchem.Boron.ReactionBoronIsotope" href="#PALEOaqchem.Boron.ReactionBoronIsotope"><code>PALEOaqchem.Boron.ReactionBoronIsotope</code></a> — <span class="docstring-category">Type</span><span class="is-flex-grow-1 docstring-article-toggle-button" title="Collapse docstring"></span></header><section><div><pre><code class="language-julia hljs">ReactionBoronIsotope</code></pre><p>Calculate d11B for aqueous B(OH)4- and B(OH)3 species from mass balance, given d11B for total B, total B concentration <code>B_conc</code> and B(OH)4- concentration <code>BOH4_conc</code>.</p><p>See eg (<a href="../References/#Zeebe2001">Zeebe and Wolf-Gladrow, 2001</a>), p220.</p><p><strong>Parameters</strong></p><ul><li><code>alphaB[Float64]</code>=1.0272, <code>default_value</code>=1.0272, <code>description</code>=&quot;isotopic fractionation factor B(OH)4m &lt;-&gt; B(OH)3&quot;</li><li><code>BIsotope[external, UnionAll]</code>=PALEOboxes.IsotopeLinear, <code>default_value</code>=PALEOboxes.IsotopeLinear, <code>allowed_values</code>=Type[PALEOboxes.ScalarData, PALEOboxes.IsotopeLinear], <code>description</code>=&quot;disable / enable boron isotopes and specify isotope type&quot;</li></ul><p><strong>Methods and Variables</strong></p><ul><li><code>do_boron_isotope</code><ul><li><code>B_conc</code> (mol m-3), <code>VT_ReactDependency</code>, <code>description</code>=&quot;B concentration&quot;</li><li><code>BOH4_conc</code> (mol m-3), <code>VT_ReactDependency</code>, <code>description</code>=&quot;B(OH)4m concentration&quot;</li><li><code>B_delta</code> (per mil), <code>VT_ReactDependency</code>, <code>description</code>=&quot;d11B delta for total B&quot;</li><li><code>BOH4_delta</code> (per mil), <code>VT_ReactProperty</code>, <code>description</code>=&quot;d11B delta for B(OH)4- species&quot;</li></ul></li></ul></div><a class="docs-sourcelink" target="_blank" href="https://github.com/PALEOtoolkit/PALEOaqchem.jl/blob/ffa87991e8b52a83b9f070b800378f60154c51c3/src/Boron.jl#L8-L21">source</a></section></article></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../Carbonate chemistry/">« Carbonate chemistry</a><a class="docs-footer-nextpage" href="../functions/">PALEOaqchem functions »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option 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(1997). <em>Diagenetic models and their implementation; modelling transport and reactions in aquatic sediments</em> (Springer); p. 414.</div></li><li><div id="VanHeuven2011">van Heuven, S.; Pierrot, D.; Rae, J.; Lewis, E. and Wallace, D. (2011). <a href="https://cdiac.ess-dive.lbl.gov/ftp/co2sys/CO2SYS_calc_MATLAB_v1.1/"><em>MATLAB Program Developed for CO2 System Calculations. ORNL/CDIAC-105b</em></a> (<a href="https://doi.org/10.3334/CDIAC/otg.CO2SYS_MATLAB_v1.1">Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee.</a>).</div></li><li><div id="Lewis1998">Lewis, E. and Wallace, D. W. (1998). <a href="https://salish-sea.pnnl.gov/media/ORNL-CDIAC-105.pdf"><em>Program Developed for CO2 System Calculations. ORNL/CDIAC-105</em></a> (Carbon Dioxide Inf. Anal. Cent., Oak Ridge Natl. Lab., Oak Ridge, Tenn.).</div></li><li><div id="Ozaki2011">Ozaki, K.; Tajima, S. and Tajika, E. (2011). <em>Conditions required for oceanic anoxia/euxinia: Constraints from a one-dimensional ocean biogeochemical cycle model</em>. <a href="https://doi.org/10.1016/j.epsl.2011.02.011">Earth and Planetary Science Letters <strong>304</strong>, 270–279</a>.</div></li><li><div id="Romaniello2010a">Romaniello, S. J. and Derry, L. A. (2010). <em>Validation of an intermediate-complexity model for simulating marine biogeochemistry under anoxic conditions in the modern Black Sea</em>. <a href="https://doi.org/10.1029/2009GC002712">Geochemistry Geophysics Geosystems <strong>11</strong>, 1–18</a>.</div></li><li><div id="steefel_reactive_2015">Steefel, C. I.; Appelo, C. A.; Arora, B.; Jacques, D.; Kalbacher, T.; Kolditz, O.; Lagneau, V.; Lichtner, P. C.; Mayer, K. U.; Meeussen, J. C.; Molins, S.; Moulton, D.; Shao, H.; Šimůnek, J.; Spycher, N.; Yabusaki, S. B. and Yeh, G. T. (2015). <a href="http://link.springer.com/10.1007/s10596-014-9443-x"><em>Reactive transport codes for subsurface environmental simulation</em></a>. <a href="https://doi.org/10.1007/s10596-014-9443-x">Computational Geosciences <strong>19</strong>, 445–478</a>. Accessed on Apr 28, 2021.</div></li><li><div id="Zeebe2001">Zeebe, R. E. and Wolf-Gladrow, D. a. (2001). <a href="https://www.elsevier.com/books/co2-in-seawater-equilibrium-kinetics-isotopes-65/zeebe/978-0-444-50946-8"><em>CO2 in Seawater: Equilibrium, Kinetics, Isotopes</em></a> (Elsevier); p. 360.</div></li><li><div id="VanCappellen1996a">Van Cappellen, P. and Wang, Y. (1996). <em>Cycling of iron and manganese in surface sediments; a general theory for the coupled transport and reaction of carbon, oxygen, nitrogen, sulfur, iron, and manganese</em>. <a href="https://doi.org/10.2475/ajs.296.3.197">American Journal of Science <strong>296</strong>, 197–243</a>.</div></li></ul></div></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../functions/">« PALEOaqchem functions</a><a class="docs-footer-nextpage" href="../indexpage/">Index »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.8.0 on <span class="colophon-date" title="Tuesday 26 November 2024 18:47">Tuesday 26 November 2024</span>. 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