Code

Edits to User Guide documentation#995

Code

Merged

atravitz merged 25 commits intomainOpenFreeEnergy/openfe:mainfrom docs_user_guide_editsOpenFreeEnergy/openfe:docs_user_guide_editsCopy head branch name to clipboardNov 15, 2024

+206-245

Commits

Commits on Oct 31, 2024

• adding cross-page references

  atravitz

  committed
  4b90b00

• setup index edits

  atravitz

  committed
  22d9751

• edits to chemical systems docs

  atravitz

  committed
  1cca068

• edits to atom mappings and scores

  atravitz

  committed
  5173b30

Commits on Nov 1, 2024

• formatting fixes to atom mappings

  atravitz

  committed
  4982c71

• updating protocol user guide docs

  atravitz

  committed
  4544d60

• edits to ligand networks guide

  atravitz

  committed
  52ff058

• edits to alchemical network planners

  atravitz

  committed
  fae1a9d

• remove accidentally added .pngs

  atravitz

  committed
  9fd6757

• Merge branch 'main' into docs_user_guide_edits

  atravitz

  authored
  2ae25f1

Commits on Nov 5, 2024

• Update docs/guide/setup/defining_protocols.rst

  Show description for e192696
  

  atravitz

  and

  IAlibay

  authored
  e192696

• Update docs/guide/setup/index.rst

  Show description for e2c6c4e
  

  atravitz

  and

  IAlibay

  authored
  e2c6c4e

Commits on Nov 12, 2024

• adding links to introduction

  atravitz

  committed
  0b2978d

• Apply suggestions from code review

  Show description for 3895871
  

  4 peopleauthored
  3895871

• Merge branch 'main' into docs_user_guide_edits

  atravitz

  authored
  8ad09d1

• Apply suggestions from code review

  Show description for 5a7737c
  

  atravitz

  and

  ijpulidos

  authored
  5a7737c

• fixing bash rendering

  atravitz

  committed
  83d1093

• fixing typo

  atravitz

  committed
  360e317

• making language clearer

  atravitz

  committed
  93eb486

Commits on Nov 13, 2024

• making protocol description clearer

  atravitz

  committed
  10e13e7

• renaming to Results Gathering

  atravitz

  committed
  96cb6f1

• back to bold

  atravitz

  committed
  6dcf884

Commits on Nov 14, 2024

• making warning more visible

  atravitz

  committed
  0c8f130

Commits on Nov 15, 2024

• Apply suggestions from code review

  Show description for 4273a36
  

  atravitz

  and

  mikemhenry

  authored
  4273a36

• Merge branch 'main' into docs_user_guide_edits

  hannahbaumann

  authored
  6e44bfb