OpenBEL API 1.0.4 - Dockerized

Added

• Docker containers for development and production use of OpenBEL

Changed

• Converted authentication to use Keycloak Pubkey RSA256 Token authentication

OpenBEL API 0.6.2

This is the sixth release of OpenBEL API.

View all of the commits for this release.

Fixed

• Missing authorization header reported when header is malformed (Issue #105).

Known Issue

Datasets are stored with a URI computed from the scheme and host that is serving the OpenBEL API. For example if OpenBEL API is served from http://web.site.com then dataset URIs will be of the form http://web.site.com/api/datasets/{UUID}. If you change the scheme and host these URIs will be inconsistent and you will not be able to retrieve your datasets. You will have to re-import your documents.

• See Issue #102.

View the CHANGELOG for the full history.

If you're ready to jump in and try it follow Get up and Running.

Of course if you have any issues please...Open an issue!

You can also reach the community at:

OpenBEL API 0.6.1

This is the fifth release of OpenBEL API. See 0.6.0 release for enhancements and fixes.

View all of the commits for this release.

Changed

• Bumped gems specification date. Requires new version because 0.6.0 was yanked from RubyGems.

Known Issue

Datasets are stored with a URI computed from the scheme and host that is serving the OpenBEL API. For example if OpenBEL API is served from http://web.site.com then dataset URIs will be of the form http://web.site.com/api/datasets/{UUID}. If you change the scheme and host these URIs will be inconsistent and you will not be able to retrieve your datasets. You will have to re-import your documents.

• See [Issue #102][102].

View the CHANGELOG for the full history.

If you're ready to jump in and try it follow Get up and Running.

Of course if you have any issues please...Open an issue!

You can also reach the community at:

OpenBEL API 0.6.0

This is the fourth release of OpenBEL API.

View all of the commits for this release.

Added

• Retrieve evidence in a format supported by BEL translator plugins (Issue 44).
• Retrieve dataset evidence in a format supported by BEL translator plugins (Issue 99).

Fixed

• Dataset evidence collection is missing annotation/namespace URIs (Issue 95).
• Facets are not created for evidence uploaded through a dataset.

Changed

• MongoDB version 3.2.0 is now required due to use of $slice operator in Aggregation queries.

Known Issue

Datasets are stored with a URI computed from the scheme and host that is serving the OpenBEL API. For example if OpenBEL API is served from http://web.site.com then dataset URIs will be of the form http://web.site.com/api/datasets/{UUID}. If you change the scheme and host these URIs will be inconsistent and you will not be able to retrieve your datasets. You will have to re-import your documents.

• See Issue #102.

View the CHANGELOG for the full history.

If you're ready to jump in and try it follow Get up and Running.

Of course if you have any issues please...Open an issue!

You can also reach the community at:

OpenBEL API 0.5.1

This is the third release of OpenBEL API. It is a bugfix release that addresses an issue in 0.5.0.

Fixed

• Authentication error for MongoDB user when faceting on GET /api/evidence ([Issue #93][93]).

View the CHANGELOG for the full history.

If you're ready to jump in and try it follow Get up and Running.

Of course if you have any issues please...Open an issue!

You can also reach the community at:

OpenBEL API 0.5.0

This is the second release of OpenBEL API. The OpenBEL API has the following OpenBEL dependencies:

• bel (version 0.4.1)
  • Ruby library for processing BEL content.
• bel-rdf-jena (0.4.1)
  • Plugin to bel.rb to access Apache Jena TDB databases through RDF.rb's Repository abstraction.
• bel-search-sqlite (0.4.2)
  • Plugin to bel.rb to search annotations and namespaces using SQLite full-text search.

View the CHANGELOG for the changes.

If you're ready to jump in and try it follow Get up and Running.

Of course if you have any issues please...Open an issue!

You can also reach the community at:

OpenBEL API 0.4.0

This is the first release of OpenBEL API. Its version is published as 0.4.0 to match the latest release of bel and related plugins. The OpenBEL API has the following OpenBEL dependencies:

• bel (version 0.4.0)
  • Ruby library for processing BEL content.
• bel-rdf-jena (0.4.0)
  • Plugin to bel.rb to access Apache Jena TDB databases through RDF.rb's Repository abstraction.
• bel-search-sqlite (0.4.0)

View the CHANGELOG for the first set of features!

If you're ready to jump in and try it follow Get up and Running.

Of course if you have any issues please...Open an issue!

You can also reach the community at: