MCMTpy first add 2021.10.12

LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2021 Fu Yin
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

MANIFEST.in

@@ -0,0 +1 @@
+global-include *.py

MCMTpy.egg-info/PKG-INFO

@@ -0,0 +1,150 @@
+Metadata-Version: 1.1
+Name: MCMTpy
+Version: 0.1.0a1
+Summary: MCMTpy is Created on Sun Apr 18 17:24:43 2021
+Home-page: https://www.google.com.hk/
+Author: Fu Yin
+Author-email: [email protected]
+License: MIT
+Description: MCMTpy
+        ======
+
+
+
+        About
+        -------------
+        🚨 **The package is still undergoing development.** 🚨
+
+        MCMTpy is a Python package designed for seismic source study. It provides functionality for focal mechanism 
+        inversion and source parameters analysis.
+
+        MCMTpy has mainly provided functions as:
+
+        * Focal mechanism inversion of the double couple source and moment tensor using improved **Markov chain Monte Carlo** method.
+        * A series of scripts is provided for source parameter calculation and conversion.
+        * Moment tensor decompose, Huston plot and Beachball with station projected.
+        * A new framework for source inversion based on a python's workflow.
+
+        and it has the features as:
+
+        * The package MCMTpy runs on Unix-like systems including Mac and Linux.
+        * It has a close integration with Obspy, pyfk and pyasdf.
+        * It can be done in parallel based on mpi4py.
+        * It's is efficient to do the seismological research based on python.
+
+        .. image:: ./docs/figures/logo/logo-small-cut.png
+            :width: 80%
+            :align: center
+
+
+
+
+        Documentation
+        -------------
+        Detailed `documentation <https://github.com/OUCyf/>`_ can be found here.
+
+
+
+        Citation
+        -------------
+        If you use **MCMTpy** for your research and prepare publications, please citing **MCMTpy**: 
+
+        * MCMTpy: A Python Package for Simultaneous Inversion of Source Location, Focal Mechanism, and Rupture Directivity. 
+          In prep for Seismological Research Letter.
+
+
+
+
+
+        Quick Installation
+        ---------------------
+        Firstly, make sure **Anaconda** has been installed, then::
+
+            $ conda create -n MCMTpy  python=3.8 numpy=1.16 matplotlib=3.1.1 mpi4py obspy pyasdf json5 tqdm
+            $ conda activate MCMTpy
+            $ pip install pyfk
+            $ pip install MCMTpy
+
+        Some errors may occurred of that pyfk not support the new version of ``cysignals``, please::
+
+            $ conda uninstall cysignals 
+            $ pip install cysignals==1.10.2
+            $ pip install pyfk
+
+
+        Successful installation will generate an executable program ``MCMTpy`` under the anaconda environment path: 
+        */Users/user/opt/anaconda3/bin*. And run following code to check the installation::
+
+            $ MCMTpy --help
+
+
+
+
+
+
+
+        Short Tutorial
+        -----------------
+        MCMTpy stores all the parameter information in four JSON files: **build_GFs.json**, **syn.json**, 
+        **sample.json** and **plot.json**, and you can find those json-files in path *./MCMTpy-master/jsons/*. 
+        For parameters choosing, please refer to **Detailed tutorial**. The steps to do inversion process are:
+
+        **1. Calculate green function database**::
+
+            $ MCMTpy build_GFs pyfk  -c ./build_GFs.json
+            $ mpirun -n 4 MCMTpy build_GFs pyfk  -c ./build_GFs.json        # parallel
+
+        **2. Synthesize the test data**::
+
+            $ MCMTpy  syn pyfk  -c ./syn.json
+
+        **3. Inversion of focal mechanism**::
+
+            $ MCMTpy  sample MH  -c ./sample.json
+            $ mpirun -n 4  MCMTpy  sample MH  -c ./sample.json        # parallel
+
+        **4. Result visualization**::
+
+            $ MCMTpy plot pyfk -c plot.json
+
+
+        .. image:: ./docs/figures/station_location.png
+            :width: 100%
+            :align: center
+        .. image:: ./docs/figures/hist.png
+            :width: 100%
+            :align: center
+        .. image:: ./docs/figures/misfit.png
+            :width: 100%
+            :align: center
+        .. image:: ./docs/figures/alpha.png
+            :width: 100%
+            :align: center
+        .. image:: ./docs/figures/waveform.png
+            :width: 100%
+            :align: center
+        .. image:: ./docs/figures/beachball.png
+            :width: 100%
+            :align: center    
+        .. image:: ./docs/figures/Decompose.png
+            :width: 100%
+            :align: center
+
+
+
+        License
+        -------
+        MCMTpy is a free software: you can redistribute it and/or modify it under the terms of
+        the **MIT License**. A copy of this license is provided in
+        `LICENSE <https://github.com/OUCyf>`__.
+
+Platform: UNKNOWN
+Classifier: Development Status :: 3 - Alpha
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Science/Research
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: MacOS
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Scientific/Engineering :: Physics

MCMTpy.egg-info/SOURCES.txt

@@ -0,0 +1,61 @@
+MANIFEST.in
+README.rst
+setup.py
+MCMTpy/__init__.py
+MCMTpy/__version__.py
+MCMTpy/info.py
+MCMTpy.egg-info/PKG-INFO
+MCMTpy.egg-info/SOURCES.txt
+MCMTpy.egg-info/dependency_links.txt
+MCMTpy.egg-info/entry_points.txt
+MCMTpy.egg-info/requires.txt
+MCMTpy.egg-info/top_level.txt
+MCMTpy/apps/MCMTpy.py
+MCMTpy/apps/__init__.py
+MCMTpy/gfs/__init__.py
+MCMTpy/gfs/build_GFs.py
+MCMTpy/gfs/pyfk_GFs/__init__.py
+MCMTpy/gfs/pyfk_GFs/build_GFs_pyfk.py
+MCMTpy/gfs/pyfk_GFs/cal_gfs.py
+MCMTpy/gfs/pyfk_GFs/read_json.py
+MCMTpy/gfs/sem_GFs/__init__.py
+MCMTpy/gfs/sem_GFs/build_GFs_sem.py
+MCMTpy/plotting/__init__.py
+MCMTpy/plotting/plot.py
+MCMTpy/plotting/pyfk_plot/__init__.py
+MCMTpy/plotting/pyfk_plot/plot_accept_ratio.py
+MCMTpy/plotting/pyfk_plot/plot_hist.py
+MCMTpy/plotting/pyfk_plot/plot_misfit.py
+MCMTpy/plotting/pyfk_plot/plot_waveform.py
+MCMTpy/sampler/__init__.py
+MCMTpy/sampler/sample.py
+MCMTpy/sampler/grid/__init__.py
+MCMTpy/sampler/grid/read_grid_json.py
+MCMTpy/sampler/grid/sample_grid.py
+MCMTpy/sampler/grid/sampler_module.py
+MCMTpy/sampler/pyfk_MH/__init__.py
+MCMTpy/sampler/pyfk_MH/read_sampler_json.py
+MCMTpy/sampler/pyfk_MH/sample_MH.py
+MCMTpy/sampler/pyfk_MH/sampler_module.py
+MCMTpy/syn/__init__.py
+MCMTpy/syn/syn.py
+MCMTpy/syn/pyfk_syn/__init__.py
+MCMTpy/syn/pyfk_syn/syn_pyfk.py
+MCMTpy/syn/sem_syn/__init__.py
+MCMTpy/utils/MomentTensor.py
+MCMTpy/utils/__init__.py
+MCMTpy/utils/asdf_function.py
+MCMTpy/utils/distaz.py
+MCMTpy/utils/rotate.py
+docs/source/conf.py
+docs/source/tutorials/S1_setup_gfs.py
+docs/source/tutorials/S2_plot_syn.py
+docs/source/tutorials/S2_syn_waveform.py
+docs/source/tutorials/S3_processing_data.py
+docs/source/tutorials/S4_alpha.py
+docs/source/tutorials/S4_inv.py
+docs/source/tutorials/S5_plot.py
+docs/source/tutorials/S7_plot_beachball.py
+docs/source/tutorials/S8_plot_decompose.py
+docs/source/tutorials/S9_plot_hudson.py
+test/__init__.py

MCMTpy.egg-info/dependency_links.txt

@@ -0,0 +1 @@
+

MCMTpy.egg-info/entry_points.txt

@@ -0,0 +1,3 @@
+[console_scripts]
+MCMTpy = MCMTpy.apps.MCMTpy:main
+

MCMTpy.egg-info/requires.txt

@@ -0,0 +1,8 @@
+numpy>=1.14
+tqdm>=4.19.4
+matplotlib<=3.1.1
+mpi4py
+obspy
+pyfk
+pyasdf
+json5

MCMTpy.egg-info/top_level.txt

@@ -0,0 +1,2 @@
+MCMTpy
+test

MCMTpy/__init__.py

@@ -0,0 +1,13 @@
+from MCMTpy.gfs.build_GFs import build_GFs
+from MCMTpy.sampler.sample import sample
+from MCMTpy.syn.syn import syn
+from MCMTpy.plotting.plot import plot
+from MCMTpy.utils import MomentTensor
+
+__all__ = [
+    "build_GFs",
+    "sample",
+    "syn",
+    "plot",
+    "MomentTensor",
+    ]

MCMTpy/__version__.py

@@ -0,0 +1,13 @@
+# __major_version__  = 0
+# __minor_version__  = 1
+# __patch__          = 0
+# __release__        = "a1"
+# __version_number__ = ".".join(
+#     (
+#         str(__major_version__),
+#         str(__minor_version__),
+#         str(__patch__)
+#     )
+# )
+# f"{__version_number__}{__release__}"
+__version__          ='0.1.0a1'