Fix parabolic fit to include T dependence

utils/parabolic_fit.py

@@ -3,54 +3,102 @@
 import matplotlib.pyplot as plt
 from scipy.optimize import curve_fit
 
+#usage:
+#python parabolic_fit.py phaseL 900. FvsC900.csv 920. FvsC920.csv 0.7 0.85
+
 #
 def poly2(x, A, B, C):
   y = A*x*x+B*x+C
   return y
 
 nargs = len(sys.argv)
 
-ra = np.genfromtxt('FvsC.csv', delimiter=',',dtype=None, names=True)
+phase = sys.argv[1]
+print("phase {}".format(phase))
+
+if phase=='phaseL':
+  col = 1
+if phase=='phaseA':
+  col = 2
+if phase=='phaseB':
+  col = 3
+
+filenames = []
+temperatures = []
+
+temperatures.append(sys.argv[2])
+temperatures.append(sys.argv[4])
+
+Tref = eval(temperatures[0])
 
-aa = ra.view(np.float64).reshape(len(ra), -1)
+filenames.append(sys.argv[3])
+filenames.append(sys.argv[5])
 
-nrows = aa.shape[0]
+a=[]
+b=[]
+c=[]
 
-#limit x range on left
-if nargs>1:
-  xmin = eval(sys.argv[1])
-  print("Min. value for x = {}".format(xmin))
-  n=int(nrows*xmin)
-  for i in range(n):
-    print('remove row 0')
-    aa = np.delete(aa, (0), axis=0)
+for filename, temperature in zip(filenames,temperatures):
+  print("filename = {}".format(filename))
+  print("temperature = {}".format(temperature))
+  ra = np.genfromtxt(filename, delimiter=',',dtype=None, names=True)
 
-#limit x range on right
-if nargs>2:
-  xmax = eval(sys.argv[2])
-  print("max. value for x = {}".format(xmax))
-  n=int(nrows*xmax)
-  print(n)
-  for i in range(nrows-n):
-    print("remove row {}".format(nrows-i-1))
-    aa = np.delete(aa, (nrows-i-1), axis=0)
+  aa = ra.view(np.float64).reshape(len(ra), -1)
 
+  nrows = aa.shape[0]
 
-x=aa[:,0]
+  #limit x range on right
+  if nargs>7:
+    xmax = eval(sys.argv[7])
+    print("max. value for x = {}".format(xmax))
+    n=int(nrows*xmax)
+    print(n)
+    for i in range(nrows-n):
+      #print("remove row {}".format(nrows-i-1))
+      aa = np.delete(aa, (nrows-i-1), axis=0)
 
-#loop over columns > 0 (phases)
-for j in range(1,aa.shape[1]):
-  y=aa[:,j]
+  #limit x range on left
+  if nargs>6:
+    xmin = eval(sys.argv[6])
+    print("Min. value for x = {}".format(xmin))
+    n=int(nrows*xmin)
+    for i in range(n):
+      #print('remove row 0')
+      aa = np.delete(aa, (0), axis=0)
 
-  parameters, covariance = curve_fit(poly2, x,y)
-  fit_A=parameters[0]
-  fit_B=parameters[1]
-  fit_C=parameters[2]
-  print("polynomial {}*x^2 + {}*x + {}".format(fit_A,fit_B,fit_C))
+  x=aa[:,0]
 
-  fit_y = poly2(x, fit_A, fit_B, fit_C)
+  y=aa[:,col]
+
+  p, covariance = curve_fit(poly2, x,y)
+  a.append(p[0])
+  b.append(p[1])
+  c.append(p[2])
+  print("T = {}, polynomial {}*x^2 + {}*x + {}".format(temperature,p[0],p[1],p[2]))
+
+  fit_y = poly2(x, p[0], p[1], p[2])
   plt.plot(x,y,'o')
   plt.plot(x,fit_y,'-')
+  #plotfile = "parabolic_fit"+str(temperature)+".png"
+  #plt.savefig(plotfile, dpi=100)
+
+
+dTinv=1./(eval(temperatures[1])-eval(temperatures[0]))
+a0=2*a[0]
+a1=2*(a[1]-a[0])*dTinv
+b0=b[0]
+b1=(b[1]-b[0])*dTinv
+c0=c[0]
+c1=(c[1]-c[0])*dTinv
+print("0.5*({}+{}*(T-{}))*x^2 + ({}+{}*(T-{}))*x + ({}+{}*(T-{}))".format(a0,a1,Tref,b0,b1,Tref,c0,c1,Tref))
+
+temperature=0.5*(eval(temperatures[0])+eval(temperatures[1]))
+p0=0.5*(a0+a1*(temperature-Tref))
+p1=b0+b1*(temperature-Tref)
+p2=c0+c1*(temperature-Tref)
 
-plt.savefig('parabolic_fit.png', dpi=100)
+fit_y = poly2(x, p0, p1, p2)
+plt.plot(x,fit_y,'-')
+plotfile = "parabolic_fit"+str(temperature)+".png"
+plt.savefig(plotfile, dpi=100)