University of Oslo Abel

Bifrost can be used on the University of Oslo cluster.

Users with access to the NN9305k project.

Nextflow is available in the project's bin directory. This means that it should be directly available on the command line to project users.

The current bifrost pipeline is available in the vi_src/Bifrost directory. The configuration file needed to run on the Abel cluster can also be found there.

Others

If you are not a member of the NN9305k project, you can still use Bifrost on abel. To do that, you will need to download Nextflow and create a conda environment for the other tools, as described on the Installation webpages.

Options and modules

Note: accurate as of October 2023.

Nextflow.io is a java program, which needs access to java. To get access to the right java:

$ module load Java/11.0.16