Repository for test Torchreg registration tool comparing with antsRegistration affine.
Data from ISBI 2015 - MS Lesion segmentation available here
Test based on this blog
a) Torchreg in notebook
b) antsRegistrationSyNQuick.sh -f sub01_ses02_t2.nii.gz -m sub01_ses01_pd.nii.gz -o sub01_ses01_pd_to_sub01_ses02_t2_ -t a
MeasureImageSimilarity -d 3 -m MI[sub01_ses02_t2.nii.gz, sub01_PD_to_ses02_t2.nii.gz ,1,32]
0.797
MeasureImageSimilarity -d 3 -m MI[ sub01_ses02_t2.nii.gz, ants/sub01_ses01_pd_to_sub01_ses02_t2_Warped.nii.gz ,1,32]
0.802
a) Torchreg in notebook
b) antsRegistrationSyNQuick.sh -f sub01_ses02_t2.nii.gz -m sub02_ses01_pd.nii.gz -o ants/sub02_ses01_pd_to_sub01_ses02_t2_ -t a
MeasureImageSimilarity -d 3 -m MI[sub01_ses02_t2.nii.gz, sub02_PD_to_sub01_ses02_t2.nii.gz.nii.gz ,1,32]
0.529
MeasureImageSimilarity -d 3 -m MI[ sub01_ses02_t2.nii.gz, ants/sub02_ses01_pd_to_sub01_ses02_t2_Warped.nii.gz ,1,32]
0.543
Carass A, Roy S, Jog A, Cuzzocreo JL, Magrath E, Gherman A, Button J, Nguyen J, Prados F, Sudre CH, Jorge Cardoso M, Cawley N, Ciccarelli O, Wheeler-Kingshott CAM, Ourselin S, Catanese L, Deshpande H, Maurel P, Commowick O, Barillot C, Tomas-Fernandez X, Warfield SK, Vaidya S, Chunduru A, Muthuganapathy R, Krishnamurthi G, Jesson A, Arbel T, Maier O, Handels H, Iheme LO, Unay D, Jain S, Sima DM, Smeets D, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Bazin PL, Calabresi PA, Crainiceanu CM, Ellingsen LM, Reich DS, Prince JL, Pham DL. Longitudinal multiple sclerosis lesion segmentation: Resource and challenge. Neuroimage. 2017 Mar 1;148:77-102. doi: 10.1016/j.neuroimage.2016.12.064. Epub 2017 Jan 11. PMID: 28087490; PMCID: PMC5344762. PubMed:28087490