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Remove python 3.8 support and add python 3.13 support #2007

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merged 26 commits into from
Dec 19, 2024
Merged

Remove python 3.8 support and add python 3.13 support #2007

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fdf8a47
update min requirements
stephprince Nov 25, 2024
52a10b2
update environment files
stephprince Nov 25, 2024
bcfb5f1
update installation documentation
stephprince Nov 25, 2024
74271be
update workflows
stephprince Nov 25, 2024
8a84dc5
update importlib in init
stephprince Nov 25, 2024
a458c24
update min requirements file
stephprince Nov 25, 2024
a31b3d2
update workflows
stephprince Nov 25, 2024
fb53511
update changelog
stephprince Nov 25, 2024
20f9693
readd test file generation versions
stephprince Nov 25, 2024
f944c33
replace missed 3.8 versions
stephprince Nov 25, 2024
a09abe0
update ros3 environment for py313
stephprince Nov 25, 2024
34eb9fa
update minimum requirements
stephprince Nov 25, 2024
5ea7fa6
update runners for minimum python
stephprince Nov 25, 2024
6e01c29
switch to macos-13 runner for min requirements
stephprince Nov 26, 2024
7ab892e
simplify tox configuration
stephprince Nov 26, 2024
50d0db8
readd version condition
stephprince Nov 26, 2024
cba7c8c
update tox workflow command
stephprince Nov 26, 2024
347ed88
add new tox env names to workflows
stephprince Nov 26, 2024
ef3d79d
upgrade numpy minimum
stephprince Dec 7, 2024
9ac6f3e
update requirements
stephprince Dec 7, 2024
e857358
add macos latest to tests workflow
stephprince Dec 7, 2024
8684135
update position test
stephprince Dec 7, 2024
5ce386a
update minimum requirements
stephprince Dec 17, 2024
82cebe3
update pyproject.toml requirements
stephprince Dec 17, 2024
e030a83
add hdmf-zarr minimum
stephprince Dec 18, 2024
f24cb18
update requirements
stephprince Dec 18, 2024
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3 changes: 2 additions & 1 deletion .github/ISSUE_TEMPLATE/bug_report.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -61,10 +61,11 @@ body:
label: Python Version
options:
- "lower version (unsupported)"
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
- "3.13"
validations:
required: true
- type: textarea
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2 changes: 1 addition & 1 deletion .github/workflows/deploy_release.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.12'
python-version: '3.13'

- name: Install build dependencies
run: |
Expand Down
94 changes: 46 additions & 48 deletions .github/workflows/run_all_tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -22,31 +22,30 @@ jobs:
fail-fast: false
matrix:
include:
- { name: linux-python3.8-minimum , test-tox-env: py38-minimum , build-tox-env: build-py38-minimum , python-ver: "3.8" , os: ubuntu-latest }
- { name: linux-python3.9 , test-tox-env: py39 , build-tox-env: build-py39 , python-ver: "3.9" , os: ubuntu-latest }
- { name: linux-python3.10 , test-tox-env: py310 , build-tox-env: build-py310 , python-ver: "3.10", os: ubuntu-latest }
- { name: linux-python3.11 , test-tox-env: py311 , build-tox-env: build-py311 , python-ver: "3.11", os: ubuntu-latest }
- { name: linux-python3.11-opt , test-tox-env: py311-optional , build-tox-env: build-py311 , python-ver: "3.11", os: ubuntu-latest }
- { name: linux-python3.12 , test-tox-env: py312 , build-tox-env: build-py312 , python-ver: "3.12", os: ubuntu-latest }
- { name: linux-python3.12-upgraded , test-tox-env: py312-upgraded , build-tox-env: build-py312-upgraded , python-ver: "3.12", os: ubuntu-latest }
- { name: linux-python3.12-prerelease , test-tox-env: py312-prerelease, build-tox-env: build-py312-prerelease, python-ver: "3.12", os: ubuntu-latest }
- { name: windows-python3.8-minimum , test-tox-env: py38-minimum , build-tox-env: build-py38-minimum , python-ver: "3.8" , os: windows-latest }
- { name: windows-python3.9 , test-tox-env: py39 , build-tox-env: build-py39 , python-ver: "3.9" , os: windows-latest }
- { name: windows-python3.10 , test-tox-env: py310 , build-tox-env: build-py310 , python-ver: "3.10", os: windows-latest }
- { name: windows-python3.11 , test-tox-env: py311 , build-tox-env: build-py311 , python-ver: "3.11", os: windows-latest }
- { name: windows-python3.11-opt , test-tox-env: py311-optional , build-tox-env: build-py311 , python-ver: "3.11", os: windows-latest }
- { name: windows-python3.12 , test-tox-env: py312 , build-tox-env: build-py312 , python-ver: "3.12", os: windows-latest }
- { name: windows-python3.12-upgraded , test-tox-env: py312-upgraded , build-tox-env: build-py312-upgraded , python-ver: "3.12", os: windows-latest }
- { name: windows-python3.12-prerelease, test-tox-env: py312-prerelease, build-tox-env: build-py312-prerelease, python-ver: "3.11", os: windows-latest }
# minimum versions of dependencies do not have wheels or cannot be built on macos-arm64
- { name: macos-python3.8-minimum , test-tox-env: py38-minimum , build-tox-env: build-py38-minimum , python-ver: "3.8" , os: macos-13 }
- { name: macos-python3.9 , test-tox-env: py39 , build-tox-env: build-py39 , python-ver: "3.9" , os: macos-latest }
- { name: macos-python3.10 , test-tox-env: py310 , build-tox-env: build-py310 , python-ver: "3.10", os: macos-latest }
- { name: macos-python3.11 , test-tox-env: py311 , build-tox-env: build-py311 , python-ver: "3.11", os: macos-latest }
- { name: macos-python3.11-opt , test-tox-env: py311-optional , build-tox-env: build-py311 , python-ver: "3.11", os: macos-latest }
- { name: macos-python3.12 , test-tox-env: py312 , build-tox-env: build-py312 , python-ver: "3.12", os: macos-latest }
- { name: macos-python3.12-upgraded , test-tox-env: py312-upgraded , build-tox-env: build-py312-upgraded , python-ver: "3.12", os: macos-latest }
- { name: macos-python3.12-prerelease , test-tox-env: py312-prerelease, build-tox-env: build-py312-prerelease, python-ver: "3.12", os: macos-latest }
- { name: linux-python3.9-minimum , test-tox-env: test-py39-minimum , build-tox-env: build-py39-minimum , python-ver: "3.9" , os: ubuntu-latest }
- { name: linux-python3.10 , test-tox-env: test-py310 , build-tox-env: build-py310 , python-ver: "3.10", os: ubuntu-latest }
- { name: linux-python3.11 , test-tox-env: test-py311 , build-tox-env: build-py311 , python-ver: "3.11", os: ubuntu-latest }
- { name: linux-python3.11-opt , test-tox-env: test-py311-optional , build-tox-env: build-py311 , python-ver: "3.11", os: ubuntu-latest }
- { name: linux-python3.12 , test-tox-env: test-py312 , build-tox-env: build-py312 , python-ver: "3.12", os: ubuntu-latest }
- { name: linux-python3.13 , test-tox-env: test-py313 , build-tox-env: build-py313 , python-ver: "3.13", os: ubuntu-latest }
- { name: linux-python3.13-upgraded , test-tox-env: test-py313-upgraded , build-tox-env: build-py313-upgraded , python-ver: "3.13", os: ubuntu-latest }
- { name: linux-python3.13-prerelease , test-tox-env: test-py313-prerelease, build-tox-env: build-py313-prerelease, python-ver: "3.13", os: ubuntu-latest }
- { name: windows-python3.9-minimum , test-tox-env: test-py39-minimum , build-tox-env: build-py39-minimum , python-ver: "3.9" , os: windows-latest }
- { name: windows-python3.10 , test-tox-env: test-py310 , build-tox-env: build-py310 , python-ver: "3.10", os: windows-latest }
- { name: windows-python3.11 , test-tox-env: test-py311 , build-tox-env: build-py311 , python-ver: "3.11", os: windows-latest }
- { name: windows-python3.11-opt , test-tox-env: test-py311-optional , build-tox-env: build-py311 , python-ver: "3.11", os: windows-latest }
- { name: windows-python3.12 , test-tox-env: test-py312 , build-tox-env: build-py312 , python-ver: "3.12", os: windows-latest }
- { name: windows-python3.13 , test-tox-env: test-py313 , build-tox-env: build-py313 , python-ver: "3.13", os: windows-latest }
- { name: windows-python3.13-upgraded , test-tox-env: test-py313-upgraded , build-tox-env: build-py313-upgraded , python-ver: "3.13", os: windows-latest }
- { name: windows-python3.13-prerelease, test-tox-env: test-py313-prerelease, build-tox-env: build-py313-prerelease, python-ver: "3.13", os: windows-latest }
- { name: macos-python3.9-minimum , test-tox-env: test-py39-minimum , build-tox-env: build-py39-minimum , python-ver: "3.9" , os: macos-13 }
- { name: macos-python3.10 , test-tox-env: test-py310 , build-tox-env: build-py310 , python-ver: "3.10", os: macos-latest }
- { name: macos-python3.11 , test-tox-env: test-py311 , build-tox-env: build-py311 , python-ver: "3.11", os: macos-latest }
- { name: macos-python3.11-opt , test-tox-env: test-py311-optional , build-tox-env: build-py311 , python-ver: "3.11", os: macos-latest }
- { name: macos-python3.12 , test-tox-env: test-py312 , build-tox-env: build-py312 , python-ver: "3.12", os: macos-latest }
- { name: macos-python3.13 , test-tox-env: test-py313 , build-tox-env: build-py313 , python-ver: "3.13", os: macos-latest }
- { name: macos-python3.13-upgraded , test-tox-env: test-py313-upgraded , build-tox-env: build-py313-upgraded , python-ver: "3.13", os: macos-latest }
- { name: macos-python3.13-prerelease , test-tox-env: test-py313-prerelease, build-tox-env: build-py313-prerelease, python-ver: "3.13", os: macos-latest }
steps:
- name: Cancel non-latest runs
uses: styfle/[email protected]
Expand Down Expand Up @@ -93,16 +92,15 @@ jobs:
fail-fast: false
matrix:
include:
- { name: linux-gallery-python3.8-minimum , test-tox-env: gallery-py38-minimum , python-ver: "3.8" , os: ubuntu-latest }
- { name: linux-gallery-python3.12-upgraded , test-tox-env: gallery-py312-upgraded , python-ver: "3.12", os: ubuntu-latest }
- { name: linux-gallery-python3.12-prerelease , test-tox-env: gallery-py312-prerelease, python-ver: "3.12", os: ubuntu-latest }
- { name: windows-gallery-python3.8-minimum , test-tox-env: gallery-py38-minimum , python-ver: "3.8" , os: windows-latest }
- { name: windows-gallery-python3.12-upgraded , test-tox-env: gallery-py312-upgraded , python-ver: "3.12", os: windows-latest }
- { name: windows-gallery-python3.12-prerelease, test-tox-env: gallery-py312-prerelease, python-ver: "3.12", os: windows-latest }
# minimum versions of dependencies do not have wheels or cannot be built on macos-arm64
- { name: macos-gallery-python3.8-minimum , test-tox-env: gallery-py38-minimum , python-ver: "3.8" , os: macos-13 }
- { name: macos-gallery-python3.12-upgraded , test-tox-env: gallery-py312-upgraded , python-ver: "3.12", os: macos-latest }
- { name: macos-gallery-python3.12-prerelease , test-tox-env: gallery-py312-prerelease, python-ver: "3.12", os: macos-latest }
- { name: linux-gallery-python3.9-minimum , test-tox-env: gallery-py39-minimum , python-ver: "3.9" , os: ubuntu-latest }
- { name: linux-gallery-python3.13-upgraded , test-tox-env: gallery-py313-upgraded , python-ver: "3.13", os: ubuntu-latest }
- { name: linux-gallery-python3.13-prerelease , test-tox-env: gallery-py313-prerelease, python-ver: "3.13", os: ubuntu-latest }
- { name: windows-gallery-python3.9-minimum , test-tox-env: gallery-py39-minimum , python-ver: "3.9" , os: windows-latest }
- { name: windows-gallery-python3.13-upgraded , test-tox-env: gallery-py313-upgraded , python-ver: "3.13", os: windows-latest }
- { name: windows-gallery-python3.13-prerelease, test-tox-env: gallery-py313-prerelease, python-ver: "3.13", os: windows-latest }
- { name: macos-gallery-python3.9-minimum , test-tox-env: gallery-py39-minimum , python-ver: "3.9" , os: macos-13 }
- { name: macos-gallery-python3.13-upgraded , test-tox-env: gallery-py313-upgraded , python-ver: "3.13", os: macos-latest }
- { name: macos-gallery-python3.13-prerelease , test-tox-env: gallery-py313-prerelease, python-ver: "3.13", os: macos-latest }
steps:
- name: Cancel non-latest runs
uses: styfle/[email protected]
Expand Down Expand Up @@ -140,13 +138,13 @@ jobs:
fail-fast: false
matrix:
include:
- { name: conda-linux-python3.8-minimum , test-tox-env: py38-minimum , build-tox-env: build-py38-minimum , python-ver: "3.8" , os: ubuntu-latest }
- { name: conda-linux-python3.9 , test-tox-env: py39 , build-tox-env: build-py39 , python-ver: "3.9" , os: ubuntu-latest }
- { name: conda-linux-python3.10 , test-tox-env: py310 , build-tox-env: build-py310 , python-ver: "3.10", os: ubuntu-latest }
- { name: conda-linux-python3.11 , test-tox-env: py311 , build-tox-env: build-py311 , python-ver: "3.11", os: ubuntu-latest }
- { name: conda-linux-python3.12 , test-tox-env: py312 , build-tox-env: build-py312 , python-ver: "3.12", os: ubuntu-latest }
- { name: conda-linux-python3.12-upgraded , test-tox-env: py312-upgraded , build-tox-env: build-py312-upgraded , python-ver: "3.12", os: ubuntu-latest }
- { name: conda-linux-python3.12-prerelease, test-tox-env: py312-prerelease, build-tox-env: build-py312-prerelease, python-ver: "3.12", os: ubuntu-latest }
- { name: conda-linux-python3.9-minimum , test-tox-env: test-py39-minimum , build-tox-env: build-py39-minimum , python-ver: "3.9" , os: ubuntu-latest }
- { name: conda-linux-python3.10 , test-tox-env: test-py310 , build-tox-env: build-py310 , python-ver: "3.10", os: ubuntu-latest }
- { name: conda-linux-python3.11 , test-tox-env: test-py311 , build-tox-env: build-py311 , python-ver: "3.11", os: ubuntu-latest }
- { name: conda-linux-python3.12 , test-tox-env: test-py312 , build-tox-env: build-py312 , python-ver: "3.12", os: ubuntu-latest }
- { name: conda-linux-python3.13 , test-tox-env: test-py313 , build-tox-env: build-py313 , python-ver: "3.13", os: ubuntu-latest }
- { name: conda-linux-python3.13-upgraded , test-tox-env: test-py313-upgraded , build-tox-env: build-py313-upgraded , python-ver: "3.13", os: ubuntu-latest }
- { name: conda-linux-python3.13-prerelease, test-tox-env: test-py313-prerelease, build-tox-env: build-py313-prerelease, python-ver: "3.13", os: ubuntu-latest }
steps:
- name: Cancel non-latest runs
uses: styfle/[email protected]
Expand Down Expand Up @@ -201,9 +199,9 @@ jobs:
fail-fast: false
matrix:
include:
- { name: conda-linux-python3.12-ros3 , python-ver: "3.12", os: ubuntu-latest }
- { name: conda-windows-python3.12-ros3, python-ver: "3.12", os: windows-latest }
- { name: conda-macos-python3.12-ros3 , python-ver: "3.12", os: macos-latest }
- { name: conda-linux-python3.13-ros3 , python-ver: "3.13", os: ubuntu-latest }
- { name: conda-windows-python3.13-ros3, python-ver: "3.13", os: windows-latest }
- { name: conda-macos-python3.13-ros3 , python-ver: "3.13", os: macos-latest }
steps:
- name: Cancel non-latest runs
uses: styfle/[email protected]
Expand Down Expand Up @@ -248,9 +246,9 @@ jobs:
fail-fast: false
matrix:
include:
- { name: conda-linux-gallery-python3.12-ros3 , python-ver: "3.12", os: ubuntu-latest }
- { name: conda-windows-gallery-python3.12-ros3, python-ver: "3.12", os: windows-latest }
- { name: conda-macos-gallery-python3.12-ros3 , python-ver: "3.12", os: macos-latest }
- { name: conda-linux-gallery-python3.13-ros3 , python-ver: "3.13", os: ubuntu-latest }
- { name: conda-windows-gallery-python3.13-ros3, python-ver: "3.13", os: windows-latest }
- { name: conda-macos-gallery-python3.13-ros3 , python-ver: "3.13", os: macos-latest }
steps:
- name: Cancel non-latest runs
uses: styfle/[email protected]
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/run_coverage.yml
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ jobs:
- { os: macos-latest , opt_req: false }
env:
OS: ${{ matrix.os }}
PYTHON: '3.12'
PYTHON: '3.13'
steps:
- name: Cancel non-latest runs
uses: styfle/[email protected]
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/run_dandi_read_tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.12'
python-version: '3.13'

- name: Install run dependencies
run: |
Expand Down
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