Refactor Connection Sparsity #27

	name: Test code and documentation

	on:
	push:
	branches:
	- dev
	pull_request:
	branches:
	- dev


	jobs:
	test-code-style:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'

	- name: Install Poetry
	run: \|
	python -m pip install --upgrade pip
	pip install poetry

	- name: Install dependencies
	run: \|
	poetry install --with code-quality

	- name: Check with Black
	run: \|
	poetry run black --check .

	- name: Check with docformatter
	run: \|
	poetry run docformatter .

	- name: Run Flake8
	run: \|
	poetry run pflake8 .

	test-code:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.11'

	- name: Install Poetry
	run: \|
	python -m pip install --upgrade pip
	pip install poetry

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	poetry install --with dev

	- name: Run tests
	run: \|
	poetry run pytest --cov --cov-report=xml

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4
	with:
	directory: ./coverage/reports/
	env_vars: OS,PYTHON
	fail_ci_if_error: true
	files: ./coverage.xml,!./cache
	flags: unittests
	name: coverage-neurobench
	token: ${{ secrets.CODECOV_TOKEN }}
	verbose: true

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