fix a bug in parsing glycan spectra for library

Nesvilab · Sep 24, 2024 · c2083b3 · c2083b3
1 parent dd40254
commit c2083b3
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/edu/umich/andykong/ptmshepherd/glyco/GlycoAnalysis.java b/src/edu/umich/andykong/ptmshepherd/glyco/GlycoAnalysis.java
@@ -188,10 +188,10 @@ public HashMap<String, GlycanSpectrumCandidate> generateConsensusSpectra(GlycoPa
                 boolean skip = Double.parseDouble(splits[qValCol]) >= glycoParams.speclibMaxQ;
                 String[] fragmentInfo = splits.length >= fragmentStartCol ? Arrays.copyOfRange(splits, fragmentStartCol, splits.length) : new String[]{};
 
-                GlycanCandidate fragmentInfoContainer = new GlycanCandidate(glycanString, fragmentInfo, glycoParams);
-                String glycanHash = fragmentInfoContainer.toString();
                 // only include targets in fragment info
                 if (!skip) {
+                    GlycanCandidate fragmentInfoContainer = new GlycanCandidate(glycanString, fragmentInfo, glycoParams);
+                    String glycanHash = fragmentInfoContainer.toString();
                     if (glycanInputMap.containsKey(glycanHash)) {
                         glycanInputMap.get(glycanHash).add(fragmentInfoContainer);
                     } else {