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Climate Change AI: Data Extraction and Modelling from Plant Trait Literature

Datasets produced for the Data Extraction and Modelling from Plant Trait Literature project.

Data released under CC-BY.

Creative Commons License

NLP data

Dataset of traits extracted from plant description detected on BHL, Eflora and Ecoflora; comprises 59,369 species, with 888,328 traits across all species.

https://github.com/NaturalHistoryMuseum/plant-traits/tree/main/output/raw/ocr-traits

Trait Count
life form 22999
habitat 2418
habit 39556
clonality 4072
perennial organ 1227
plant min. height [m] 22796
plant max. height [m] 22803
indumentum 40997
spinescence 2117
succulence 1503
leaf arrangement 8407
leaf architecture 22391
leaf position 8796
leaf shape 45827
leaf apex 35167
leaf base 26155
leaf margin 28319
leaf min. width [cm] 33375
leaf max. width [cm] 33381
leaf min. length [cm] 38045
leaf max. length [cm] 38068
bract colour 3685
bracteole colour 375
inflorescence arrangement 8341
inflorescence orientation 269
flower sex 4750
flower architecture 437
flower merosity 218
flower symmetry 146
flower shape 1124
flower colour 13315
flower orientation 1548
petal fusion 863
petal colour 8759
petal min. width [cm] 5827
petal max. width [cm] 5825
calyx colour 3602
calyx min. length [cm] 9166
calyx max. length [cm] 9167
corolla colour 14146
corolla tube min. length [cm] 11277
corolla tube max. length [cm] 11276
corolla tube lipped 215
labellum colour 1155
labellum min. width [cm] 1607
labellum max. width [cm] 1607
spur min. length [cm] 1101
spur max. length [cm] 1102
reproduction architecture 721
reproduction system 1503
stamen number 8409
stamen arrangement 103
stamenoid number 0
stamen min. length [cm] 3969
stamen max. length [cm] 3967
staminodium 0
pollen colour 222
carpel/ovary number 1285
gynoecium arrangement 3055
heterostyly 5
pollination 1
reward 149
fruit type 403
fruit structure 1053
fruit dehiscence 1012
fruit shape 10938
fruit colour 6089
seed colour 8633
seeds per fruit min 3326
seeds per fruit max 3326
seeds per fruit min. 3154
seed min. width [mm] 5276
seed max. width [mm] 5275
seed min. length [mm] 13563
seed max. length [mm] 13566
seed min. diameter [mm] 307
seed max. diameter [mm] 307
dispersal mode 1333
ploidy level (2n) 8674
root min. depth [cm] 637
root max. depth [cm] 638

Computer vision data

Dataset of traits extracted from 14,533 Natural History Museum herbarium images.

https://github.com/NaturalHistoryMuseum/plant-traits/tree/main/output/raw/cv-traits

For each herbarium sheet, measurements were taken of each leaf or leaflet using LeafMachine2. Measurements include:

  • Length (i.e longest length of leaf/leaflet outline)
  • Width
  • Perimeter
  • Area

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