517 add configurable parent directory for patches #731
Workflow file for this run
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| name: GitHub Actions Unit Tests | |
| on: [push, pull_request] | |
| jobs: | |
| clean-and-deploy-env: | |
| runs-on: ubuntu-latest | |
| env: | |
| LD_LIBRARY_PATH: "/opt/conda/lib" | |
| steps: | |
| - name: Free Disk Space (Ubuntu) | |
| uses: jlumbroso/free-disk-space@main | |
| with: | |
| # this might remove tools that are actually needed, | |
| # if set to "true" but frees about 6 GB | |
| tool-cache: false | |
| # all of these default to true, but feel free to set to | |
| # "false" if necessary for your workflow | |
| android: true | |
| dotnet: false | |
| haskell: false | |
| large-packages: false | |
| docker-images: false | |
| swap-storage: false | |
| - name: Update the environment | |
| run: | | |
| sudo apt-get update \ | |
| && sudo apt-get install -y --no-install-recommends git wget unzip bzip2 build-essential sudo \ | |
| && sudo apt-key del 7fa2af80 \ | |
| && sudo wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-keyring_1.0-1_all.deb \ | |
| && sudo dpkg -i cuda-keyring_1.0-1_all.deb \ | |
| && sudo wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-ubuntu2004-keyring.gpg \ | |
| && sudo mv cuda-ubuntu2004-keyring.gpg /usr/share/keyrings/cuda-archive-keyring.gpg \ | |
| && sudo rm -f cuda-keyring_1.0-1_all.deb && sudo rm -f /etc/apt/sources.list.d/cuda.list | |
| - name: Install Mamba | |
| run: | | |
| sudo wget https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh -O /tmp/mamba.sh && \ | |
| /bin/bash /tmp/mamba.sh -b -p /opt/conda && \ | |
| sudo rm -rf /tmp/* && \ | |
| sudo apt-get clean && \ | |
| sudo rm -rf /var/lib/apt/lists/* | |
| - name: Set system variables | |
| run: | | |
| echo '/opt/conda' >> $GITHUB_PATH | |
| - name: Check if Custom Paths are Added | |
| run: | | |
| echo "$PATH" | |
| echo "$LD_LIBRARY_PATH" | |
| - name: Install pyenv | |
| run: | | |
| pip install pipenv | |
| pip install pytest | |
| - uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| /opt/conda/bin/mamba env create -f environment.yml | |
| echo '/opt/conda/envs/geo_deep_env/bin' >> $GITHUB_PATH | |
| - name: Test with pytest | |
| run: | | |
| pipenv run pytest tests/ |