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Docs: run Doxygen
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ChristineStawitz-NOAA committed Nov 2, 2023
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4 changes: 2 additions & 2 deletions docs/classfims__info_1_1Information.html
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<p>Create the generalized stock assessment model that will evaluate the objective function. Does error checking to make sure the program has all necessary components for the model and that they're in the right dimensions.</p>
<dl class="section return"><dt>Returns</dt><dd></dd></dl>
<p>Create the generalized stock assessment model that will evaluate the objective function. Does error checking to make sure the program has all necessary components for the model and that they're in the right dimensions. This sets up pointers to all memory objects and initializes fleet and population objects.</p>
<dl class="section return"><dt>Returns</dt><dd>True if valid model, False if invalid model, check fims.log for errors. </dd></dl>

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243 changes: 237 additions & 6 deletions docs/def_8hpp.html
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<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="func-members"></a>
Functions</h2></td></tr>
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<h2 class="groupheader">Function Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a31231204b726b1a498a84321dc9f445f">&#9670;&nbsp;</a></span>FIMS_LOG()</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a58d95516b89b5a2da7fd4d8a6413a7c4">&#9670;&nbsp;</a></span>DATA_LOG()</h2>

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<p>Data input tracking log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#a9dd6f7b6a012412894bea2d72974339b">&#9670;&nbsp;</a></span>DEBUG_LOG()</h2>

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<td class="memname">std::ofstream DEBUG_LOG </td>
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<p>Development debugging log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#a308fcf8394afe9b124fd6b8e3186fc9c">&#9670;&nbsp;</a></span>ERROR_LOG()</h2>

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<td class="memname">std::ofstream ERROR_LOG </td>
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<p>Error tracking log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#aaed3fc4723e7e09782659df8e1ab7f3a">&#9670;&nbsp;</a></span>FIMS_LOG()</h2>

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<td class="memname">std::ofstream FIMS_LOG </td>
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<td class="paramtype">&quot;fims.log&quot;&#160;</td>
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<p>Generic log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#a9da1e19e650fa7488f0d1d265e54beb9">&#9670;&nbsp;</a></span>FLEET_LOG()</h2>

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<td class="memname">std::ofstream FLEET_LOG </td>
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<p>Fleet module log file </p>

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<a id="a0f8e17cb50cccb5773dc043d265f6343"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a0f8e17cb50cccb5773dc043d265f6343">&#9670;&nbsp;</a></span>GROWTH_LOG()</h2>

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<td class="memname">std::ofstream GROWTH_LOG </td>
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<p>Growth module log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#ae4f929af3e95a7f70238f77a6a5cef5f">&#9670;&nbsp;</a></span>INFO_LOG()</h2>

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<td class="memname">std::ofstream INFO_LOG </td>
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<p>Information.hpp log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#aa51d87ef5189a685ef0f116757519abe">&#9670;&nbsp;</a></span>MATURITY_LOG()</h2>

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<td class="memname">std::ofstream MATURITY_LOG </td>
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<p>Maturity module log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#a0b04d9d9cdc2a06b215c92b40ddf0627">&#9670;&nbsp;</a></span>MODEL_LOG()</h2>

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<td class="memname">std::ofstream MODEL_LOG </td>
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<p>Model.hpp log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#acad788028ec9b157659fdb0e83c973e0">&#9670;&nbsp;</a></span>POPULATION_LOG()</h2>

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<td class="memname">std::ofstream POPULATION_LOG </td>
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<p>Populations module log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#ab79e53c483ecf6594343d0b2d5108447">&#9670;&nbsp;</a></span>RECRUITMENT_LOG()</h2>

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<td class="memname">std::ofstream RECRUITMENT_LOG </td>
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<p>Recruitment module log file </p>

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<h2 class="memtitle"><span class="permalink"><a href="#a34afbc4af6ad36508ad3d2847da6b75c">&#9670;&nbsp;</a></span>SELECTIVITY_LOG()</h2>

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<td class="memname">std::ofstream SELECTIVITY_LOG </td>
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<td class="paramtype">&quot;logs/selectivity.log&quot;&#160;</td>
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<p>Log file </p>
<p>Selectivity module log file </p>

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