Docs: run Doxygen

NOAA-FIMS · Oct 23, 2023 · 14d84a9 · 14d84a9
1 parent d540dec
commit 14d84a9
Show file tree

Hide file tree

Showing 74 changed files with 643 additions and 644 deletions.
diff --git a/docs/fleet_8hpp_source.html b/docs/fleet_8hpp_source.html
diff --git a/docs/functions.html b/docs/functions.html
@@ -84,9 +84,6 @@ <h3><a id="index_a"></a>- a -</h3><ul>
 <li>agecomp_likelihood
 : <a class="el" href="structfims_1_1Fleet.html#a7ed4398abfe3fdfcde5e82b427e93b82">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>agecomp_likelihood_id
-: <a class="el" href="structfims_1_1Fleet.html#a9d0888ee36c6b58a94a806dbf2238ccf">fims::Fleet&lt; Type &gt;</a>
-</li>
 <li>AgeCompDataInterface()
 : <a class="el" href="classAgeCompDataInterface.html#aba9ad86a36f62bfe24adcc1e763b3e06">AgeCompDataInterface</a>
 </li>

diff --git a/docs/functions_f.html b/docs/functions_f.html
@@ -91,12 +91,27 @@ <h3><a id="index_f"></a>- f -</h3><ul>
 <li>Fleet()
 : <a class="el" href="structfims_1_1Fleet.html#a62090f5493687529c8e7a5918b734ba5">fims::Fleet&lt; Type &gt;</a>
 </li>
+<li>fleet_agecomp_likelihood_id_m
+: <a class="el" href="structfims_1_1Fleet.html#a911132322db539d528895b5927a7be8a">fims::Fleet&lt; Type &gt;</a>
+</li>
 <li>fleet_id
 : <a class="el" href="structfims_1_1Population.html#ad60443941bcc652dd1a0b81d17f3c94b">fims::Population&lt; Type &gt;</a>
 </li>
+<li>fleet_index_likelihood_id_m
+: <a class="el" href="structfims_1_1Fleet.html#a0de7a9056d765aa3b81d5deac3972e45">fims::Fleet&lt; Type &gt;</a>
+</li>
 <li>fleet_iterator
 : <a class="el" href="classfims_1_1Information.html#a9d51720d64f3652c98a75e46e2e3c8c2">fims::Information&lt; T &gt;</a>
 </li>
+<li>fleet_observed_agecomp_data_id_m
+: <a class="el" href="structfims_1_1Fleet.html#accbd36abfd43d1430f5d9e9422b818e1">fims::Fleet&lt; Type &gt;</a>
+</li>
+<li>fleet_observed_index_data_id_m
+: <a class="el" href="structfims_1_1Fleet.html#ac1913c27f05418b81918b2c78fdca5f4">fims::Fleet&lt; Type &gt;</a>
+</li>
+<li>fleet_selectivity_id_m
+: <a class="el" href="structfims_1_1Fleet.html#a4fe444fd0d8e2d73d4b1e434cf816208">fims::Fleet&lt; Type &gt;</a>
+</li>
 <li>fleets
 : <a class="el" href="classfims_1_1Information.html#a036cdd955befc6268243d81b188c849b">fims::Information&lt; T &gt;</a>
 , <a class="el" href="structfims_1_1Population.html#a53071ae69f2cb883bd40f4c44e1f9b9c">fims::Population&lt; Type &gt;</a>

diff --git a/docs/functions_i.html b/docs/functions_i.html
@@ -111,9 +111,6 @@ <h3><a id="index_i"></a>- i -</h3><ul>
 <li>index_likelihood
 : <a class="el" href="structfims_1_1Fleet.html#abd151fe95b3f821291494ba7e564daf3">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>index_likelihood_id
-: <a class="el" href="structfims_1_1Fleet.html#aa3081acebbaa075c8a2e7425a7f5aa4c">fims::Fleet&lt; Type &gt;</a>
-</li>
 <li>IndexDataInterface()
 : <a class="el" href="classIndexDataInterface.html#a3cf28fb4c8210b1829f0cf0db42593dd">IndexDataInterface</a>
 </li>

diff --git a/docs/functions_o.html b/docs/functions_o.html
@@ -74,18 +74,12 @@ <h3><a id="index_o"></a>- o -</h3><ul>
 <li>observed_agecomp_data
 : <a class="el" href="structfims_1_1Fleet.html#a1fcf95f3fbe97fbad3e79032d03cb63a">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>observed_agecomp_data_id
-: <a class="el" href="structfims_1_1Fleet.html#af0d89d413658609b472a1f1f9468d44f">fims::Fleet&lt; Type &gt;</a>
-</li>
 <li>observed_data
 : <a class="el" href="classDataInterfaceBase.html#af9ee39d3918b797fd8f5b59b73865530">DataInterfaceBase</a>
 </li>
 <li>observed_index_data
 : <a class="el" href="structfims_1_1Fleet.html#abcb9fdb74c91a5fcf33fb61b3cb050f0">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>observed_index_data_id
-: <a class="el" href="structfims_1_1Fleet.html#a8568482baf9621eb4befa80f89e99a89">fims::Fleet&lt; Type &gt;</a>
-</li>
 <li>operator()()
 : <a class="el" href="structfims_1_1DataObject.html#a9da05e4608f7ce171d9a673c106c2b6b">fims::DataObject&lt; Type &gt;</a>
 </li>

diff --git a/docs/functions_s.html b/docs/functions_s.html
@@ -80,9 +80,6 @@ <h3><a id="index_s"></a>- s -</h3><ul>
 <li>selectivity
 : <a class="el" href="structfims_1_1Fleet.html#acf5f3eab88744b8e0168ce5ed7f19309">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>selectivity_id
-: <a class="el" href="structfims_1_1Fleet.html#a9efede844bf5a7324a58dedebe697438">fims::Fleet&lt; Type &gt;</a>
-</li>
 <li>selectivity_models
 : <a class="el" href="classfims_1_1Information.html#a22c808bcce23f5e7cb0be263dd3ebb91">fims::Information&lt; T &gt;</a>
 </li>

diff --git a/docs/functions_vars.html b/docs/functions_vars.html
@@ -80,9 +80,6 @@ <h3><a id="index_a"></a>- a -</h3><ul>
 <li>agecomp_likelihood
 : <a class="el" href="structfims_1_1Fleet.html#a7ed4398abfe3fdfcde5e82b427e93b82">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>agecomp_likelihood_id
-: <a class="el" href="structfims_1_1Fleet.html#a9d0888ee36c6b58a94a806dbf2238ccf">fims::Fleet&lt; Type &gt;</a>
-</li>
 <li>ages
 : <a class="el" href="classEWAAGrowthInterface.html#aed99ee7c0a5c4e72fcb746ff7683d510">EWAAGrowthInterface</a>
 , <a class="el" href="structfims_1_1Population.html#a24d72dd70fb273a22a798a0d70f7237a">fims::Population&lt; Type &gt;</a>
@@ -199,9 +196,24 @@ <h3><a id="index_f"></a>- f -</h3><ul>
 : <a class="el" href="structfims_1_1FIMSObject.html#a55787c34a989c76c5ae35883b2f333e5">fims::FIMSObject&lt; T &gt;</a>
 , <a class="el" href="classfims_1_1Information.html#a5df4d0764aa0f0af3412efb66c77312e">fims::Information&lt; T &gt;</a>
 </li>
+<li>fleet_agecomp_likelihood_id_m
+: <a class="el" href="structfims_1_1Fleet.html#a911132322db539d528895b5927a7be8a">fims::Fleet&lt; Type &gt;</a>
+</li>
 <li>fleet_id
 : <a class="el" href="structfims_1_1Population.html#ad60443941bcc652dd1a0b81d17f3c94b">fims::Population&lt; Type &gt;</a>
 </li>
+<li>fleet_index_likelihood_id_m
+: <a class="el" href="structfims_1_1Fleet.html#a0de7a9056d765aa3b81d5deac3972e45">fims::Fleet&lt; Type &gt;</a>
+</li>
+<li>fleet_observed_agecomp_data_id_m
+: <a class="el" href="structfims_1_1Fleet.html#accbd36abfd43d1430f5d9e9422b818e1">fims::Fleet&lt; Type &gt;</a>
+</li>
+<li>fleet_observed_index_data_id_m
+: <a class="el" href="structfims_1_1Fleet.html#ac1913c27f05418b81918b2c78fdca5f4">fims::Fleet&lt; Type &gt;</a>
+</li>
+<li>fleet_selectivity_id_m
+: <a class="el" href="structfims_1_1Fleet.html#a4fe444fd0d8e2d73d4b1e434cf816208">fims::Fleet&lt; Type &gt;</a>
+</li>
 <li>fleets
 : <a class="el" href="classfims_1_1Information.html#a036cdd955befc6268243d81b188c849b">fims::Information&lt; T &gt;</a>
 , <a class="el" href="structfims_1_1Population.html#a53071ae69f2cb883bd40f4c44e1f9b9c">fims::Population&lt; Type &gt;</a>
@@ -267,9 +279,6 @@ <h3><a id="index_i"></a>- i -</h3><ul>
 <li>index_likelihood
 : <a class="el" href="structfims_1_1Fleet.html#abd151fe95b3f821291494ba7e564daf3">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>index_likelihood_id
-: <a class="el" href="structfims_1_1Fleet.html#aa3081acebbaa075c8a2e7425a7f5aa4c">fims::Fleet&lt; Type &gt;</a>
-</li>
 <li>initialized
 : <a class="el" href="classEWAAGrowthInterface.html#a9cc2d5f9d01adeacf478f938be9c688a">EWAAGrowthInterface</a>
 </li>
@@ -430,18 +439,12 @@ <h3><a id="index_o"></a>- o -</h3><ul>
 <li>observed_agecomp_data
 : <a class="el" href="structfims_1_1Fleet.html#a1fcf95f3fbe97fbad3e79032d03cb63a">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>observed_agecomp_data_id
-: <a class="el" href="structfims_1_1Fleet.html#af0d89d413658609b472a1f1f9468d44f">fims::Fleet&lt; Type &gt;</a>
-</li>
 <li>observed_data
 : <a class="el" href="classDataInterfaceBase.html#af9ee39d3918b797fd8f5b59b73865530">DataInterfaceBase</a>
 </li>
 <li>observed_index_data
 : <a class="el" href="structfims_1_1Fleet.html#abcb9fdb74c91a5fcf33fb61b3cb050f0">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>observed_index_data_id
-: <a class="el" href="structfims_1_1Fleet.html#a8568482baf9621eb4befa80f89e99a89">fims::Fleet&lt; Type &gt;</a>
-</li>
 </ul>
 
 
@@ -512,9 +515,6 @@ <h3><a id="index_s"></a>- s -</h3><ul>
 <li>selectivity
 : <a class="el" href="structfims_1_1Fleet.html#acf5f3eab88744b8e0168ce5ed7f19309">fims::Fleet&lt; Type &gt;</a>
 </li>
-<li>selectivity_id
-: <a class="el" href="structfims_1_1Fleet.html#a9efede844bf5a7324a58dedebe697438">fims::Fleet&lt; Type &gt;</a>
-</li>
 <li>selectivity_models
 : <a class="el" href="classfims_1_1Information.html#a22c808bcce23f5e7cb0be263dd3ebb91">fims::Information&lt; T &gt;</a>
 </li>