update yml to render pdf

NBISweden · Oct 21, 2024 · dcde0e7 · dcde0e7
1 parent 9a99b48
commit dcde0e7
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -55,10 +55,10 @@ jobs:
           echo "Rendering Rmd files ..."
           docker run --rm -u $(id -u ${USER}):$(id -g ${USER}) -v ${PWD}:/rmd ${{ env.REGISTRY }}/${{ env.ORG }}/${{ env.IMAGE }} Rscript -e 'rmarkdown::render_site()'
           # Generate PDFs
-          # cd ${PATH_EXPORT}
-          # echo "Generating PDFs ..."
-          # docker run --rm -u $(id -u ${USER}):$(id -g ${USER}) -v ${PWD}:/rmd ${{ env.REGISTRY }}/${{ env.ORG }}/${{ env.IMAGE }} Rscript -e "l <- list.files('.',pattern='slide.+html');if(length(l)!=0) {for(i in 1:length(l)) pagedown::chrome_print(l[i],extra_args=c('--no-sandbox','--disable-dev-shm-usage','--disable-gpu'))};"
-          # cd ..
+          cd ${PATH_EXPORT}
+          echo "Generating PDFs ..."
+          docker run --rm -u $(id -u ${USER}):$(id -g ${USER}) -v ${PWD}:/rmd ${{ env.REGISTRY }}/${{ env.ORG }}/${{ env.IMAGE }} Rscript -e "l <- list.files('.',pattern='slide.+html');if(length(l)!=0) {for(i in 1:length(l)) pagedown::chrome_print(l[i],extra_args=c('--no-sandbox','--disable-dev-shm-usage','--disable-gpu'))};"
+          cd ..
 
           # Render canvas version of website by changing _site.yml
           # suffixes output directory with -canvas
@@ -98,7 +98,7 @@ jobs:
               cat temp > $i
               rm -rf temp
           done
-          # echo "Generating PDFs for HTML slides ..."
+          echo "Generating PDFs for HTML slides ..."
           docker run --rm -u $(id -u ${USER}):$(id -g ${USER}) -v ${PWD}:/rmd ${{ env.REGISTRY }}/${{ env.ORG }}/${{ env.IMAGE }} Rscript -e "l <- list.files('.',pattern='slide.+html');if(length(l)!=0) {for(i in 1:length(l)) pagedown::chrome_print(l[i],extra_args=c('--no-sandbox','--disable-dev-shm-usage','--disable-gpu'))};"
           cd ..