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EMBLmyGFF3-1.2.2
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@Juke34 Juke34 released this 08 Jun 10:00
· 153 commits to master since this release
v1.2.2
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Learn about vigilant mode.

Fix:
ambiguous DNA was not handled everywhere.
Augustus example data was containing stop codon in CDS (was run without the option --noInFrameStop=true). So, this test was not passing the last validator properly. We have updated the augustus.gff file.
embl-api-validator-1.1.180.jar was raising error on Prokka example due to metadata information missing for the source feature. Indeed: At least one of the following qualifiers "strain, environmental_sample, isolate" must exist when organism belongs to Bacteria. So we have added the corresponding options to pass them by the command line. We also added a checks where we prompt the user when something is missing.
Enhancement:

progress bar

no_wrap_qualifier option added to avoid line-wrapping for qualifiers.

expose_translations option added to access easily the json mapping files.

Update help and advanced help

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