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Sindy relrease #82

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Faezehabibi
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release sindy request

ago109 and others added 20 commits July 22, 2024 17:30
@ago109
generalized rate-cell a bit
1dee123
@ago109
Merge branch 'main' of github.com:NACLab/ngc-learn
e72d75e
@ago109
touched up rate-cell further
2189f51
@ago109
minor mod to lif
23eb7ed
@ago109
updated lif-cell to use units/tags and minor cleanup and edits
1ddd86d
@willgebhardt
Monitor plot (NACLab#66)
e240644 
* Update base_monitor.py

* added plotting viewed compartments
@ago109
added meta-data to rate-cell, input encoders, adex
086bd4d
@ago109
fixed minor saving/loading in rate-cell w/ vectorized compartments
19bf502
@willgebhardt
Added auto resolving for monitors (NACLab#67)
4e298db
@ago109
fixed surr arg in lif-cell
22e0d3a
@ago109
Merge branch 'main' of github.com:NACLab/ngc-learn
42167cb
@Faezehabibi
Patched synapses added (NACLab#68)
8d74157 
* Patched synapses added

* Update __init__.py

* Update patch_utils.py

patch_with_stride & patch_with_overlap functions + Create_Patches class added

* Update patchedSynapse.py

* Update hebbianPatchedSynapse.py

* Update synapse_plot.py

order added
@sonnygeorge
Fix typo in pcn_discrim.md (NACLab#69)
da439bd
@Faezehabibi
model_utils and rate cell (NACLab#70)
7510bb3 
* Patched synapses added

* Update __init__.py

* Update patch_utils.py

patch_with_stride & patch_with_overlap functions + Create_Patches class added

* Update patchedSynapse.py

* Update hebbianPatchedSynapse.py

* Update synapse_plot.py

order added

* Create hierarchical_sc.md

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* Update sparse_coding.md

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* Add files via upload

* Delete docs/images/hgpc_network.pdf

* Add files via upload

* Update hierarchical_sc.md

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* Create hgpc

* Delete docs/images/museum/hgpc

* Create d

* Add files via upload

* Delete docs/images/hgpc_model.png

* Delete docs/images/museum/hgpc/d

* Update hierarchical_sc.md

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* Delete docs/images/museum/hgpc/Input_layer.png

* Add files via upload

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* Create Generative_PC.md

* Update and rename Generative_PC.md to generative_pc.md

* Update generative_pc.md

* Update generative_pc.md

* Update model_utils.py

* Update model_utils.py

* Update model_utils.py

* Update model_utils.py

* Update rateCell.py

* Update generative_pc.md

* Create pc-sindy.md

* Update pc-sindy.md

* Update model_utils.py

sine activation function added

* Update model_utils.py

* Update ode_utils.py

jitified

* Delete docs/museum/hierarchical_sc.md

* Delete docs/museum/generative_pc.md

* Delete ngclearn/components/synapses/patched directory

* Update __init__.py

* Add files via upload

ode with scanner added

* Update ode_solver.py

_ removed
@Faezehabibi
Fix/reorganize feature library (NACLab#74)
889d230 
* Update ode_utils.py

* Update ode_solver.py

rk4 revised and __main__ added

* Delete ngclearn/utils/diffeq/ode_functions.py

* Create odes.py

odes name and structure changed

* Update __init__.py

* Create feature_library.py

* Create __init__.py

* Create base.py

* Delete docs/museum/pc-sindy.md

* Create m.md

* Add files via upload

* Delete docs/images/museum/sindy/m.md

* Add files via upload

* Create sindy.md

* Update sindy.md

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* fix: correct feature library path and directory name

* Delete ngclearn/utils/dymbolic_dictionary directory
@Faezehabibi
Update model_utils.py (NACLab#78)
7338c34
@Faezehabibi
add sindy documentation for exhibits (NACLab#81)
94f1697 
* Add files via upload

* Add files via upload
@Faezehabibi @willgebhardt
Update ode_utils.py (NACLab#79)
de53d20 
refactor: delete @partial(jit, static_argnums=(2, )) lines

Co-authored-by: Will Gebhardt <[email protected]>
@Faezehabibi
Add patched synapse (NACLab#80)
23473ab 
* Update __init__.py

Add point to patched components

* Add patched in __init__.py

Add patched synapses importing

* Add patched synaptic components

* Delete ngclearn/components/synapses/patched/__pycache__ directory

* Update __init__.py

new line characters added

* Update hebbianPatchedSynapse.py

* Update patchedSynapse.py

new line characters added

* Update staticPatchedSynapse.py

new line characters added

* Update staticPatchedSynapse.py

New line characters + comments for describing each input vars

* Update patchedSynapse.py

Removed a comment line

* Update hebbianPatchedSynapse.py

remove unused arguments

* Update hebbianPatchedSynapse.py

* Update hebbianPatchedSynapse.py

add description for w_mask

* Update hebbianPatchedSynapse.py

* Update hebbianPatchedSynapse.py

* Update patchedSynapse.py

* Update patchedSynapse.py

* Update hebbianPatchedSynapse.py
@Faezehabibi
Merge branch 'NACLab:main' into sindy_relrease
39627f7
@ago109
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ago109 commented Dec 10, 2024

is this pull request done? Should I merge it?

(Not touching this until I get approval from @willgebhardt )

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4 participants
@Faezehabibi @ago109 @willgebhardt @sonnygeorge