Code

Stack based refactor pt. 2#34

Code

Merged

nossleinad merged 13 commits intoMurrellGroup:mainMurrellGroup/MolecularEvolution.jl:mainfrom nossleinad:Stack-based-refactor-pt.-2nossleinad/MolecularEvolution.jl:Stack-based-refactor-pt.-2Copy head branch name to clipboardAug 21, 2024

+300-167

Commits

Commits on Jun 19, 2024

• Cleanup getnodelist and co. and use Iterators.reverse

  nossleinad

  committed
  8a23198

  Copy full SHA for 8a23198

• Incorporate starting_index in set_node_indices

  nossleinad

  committed
  838663e

  Copy full SHA for 838663e

• Use Iterators.reverse

  nossleinad

  committed
  579f903

  Copy full SHA for 579f903

Commits on Jun 20, 2024

• Translate branchlength_optim! to iterative

  nossleinad

  committed
  4f67ef5

  Copy full SHA for 4f67ef5

Commits on Jun 21, 2024

• Lazy blopt

  nossleinad

  committed
  b402a74

  Copy full SHA for b402a74

Commits on Jul 22, 2024

• Use safepop approach and make lazysort an option

  nossleinad

  committed
  392d8c1

  Copy full SHA for 392d8c1

• Implement nni_optim iteratively, with blopt as template

  nossleinad

  committed
  de5f71d

  Copy full SHA for de5f71d

Commits on Jul 24, 2024

• Make traversal customizable

  nossleinad

  committed
  094afa9

  Copy full SHA for 094afa9

Commits on Jul 29, 2024

• Implement nni_optim with a full traversal

  nossleinad

  committed
  291d3b9

  Copy full SHA for 291d3b9

Commits on Aug 5, 2024

• Tidy up and add shuffle flag

  nossleinad

  committed
  6cd58c2

  Copy full SHA for 6cd58c2

• Update docstrings

  nossleinad

  committed
  894271f

  Copy full SHA for 894271f

• Merge branch 'main' into Stack-based-refactor-pt.-2

  nossleinad

  authored
  bd0961d

  Copy full SHA for bd0961d

Commits on Aug 21, 2024

• Go with full traversal

  nossleinad

  committed
  6d31c6b

  Copy full SHA for 6d31c6b