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Merge remote-tracking branch 'upstream/master' into hotfix_branch_1.0.3
* upstream/master: Remove __repr__ methods from all neighbourhood plugins (metoppv#1648) ENH: Avoiding lazy loading in select command calls (metoppv#1617) MOBT-180: Weather symbol speed up (metoppv#1638) IM-1621: Make ECC error and warning tests more rigorous (metoppv#1641) Make flake8 report that it is okay when running improver-tests. (metoppv#1645) Update checksums after updating the title of files in apply-emos-coefficients/sites. (metoppv#1640) Fixes bug in spot-extraction for multi-time inputs (metoppv#1633) Updates checksums for threshold landmask fix (metoppv#1636) Update interpret-metadata (metoppv#1632) Weather code tree update (metoppv#1635) Fix noise in precip accumulation thresholds (metoppv#1627) Expanding on triangle time blending doc strings. (metoppv#1630) Better handling and documentation of dependencies (metoppv#1589) Add tests (metoppv#1626) Enhancements on new regridding code (metoppv#1560) Speed up interpolation in ensemble_copula_coupling.ConvertProbabilitiesToPercentiles (metoppv#1578) Speed up interpolation in ensemble_copula_coupling.ResamplePercentiles (metoppv#1548) Spot-extraction additional coordinates ordering fix (metoppv#1610)
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,137 @@ | ||
| name: Scheduled Tests | ||
|
|
||
| on: | ||
| schedule: | ||
| - cron: '7 4 * * *' | ||
| workflow_dispatch: | ||
| jobs: | ||
| Sphinx-Pytest-Coverage: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| env: [latest] | ||
| if: github.repository_owner == 'metoppv' | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: actions/cache@v2 | ||
| id: cache | ||
| env: | ||
| # Increase this value to reset cache | ||
| CACHE_NUMBER: 2 | ||
| with: | ||
| path: /usr/share/miniconda/envs/im${{ matrix.env }} | ||
| key: ${{ format('{0}-conda-improver-{1}-{2}-{3}', runner.os, env.CACHE_NUMBER, matrix.env, hashFiles(format('envs/{0}.yml', matrix.env))) }} | ||
| - name: conda env update | ||
| if: steps.cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda install -c conda-forge mamba | ||
| mamba env update -q --file envs/${{ matrix.env }}.yml --name im${{ matrix.env }} | ||
| - name: conda info | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| conda info | ||
| conda list | ||
| - name: sphinx documentation | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| make -C doc html SPHINXOPTS="-W --keep-going" | ||
| - name: pytest without coverage | ||
| if: matrix.env != 'environment_a' | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| pytest | ||
| - name: pytest with coverage | ||
| if: matrix.env == 'environment_a' | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| pytest --cov=improver --cov-report xml:coverage.xml | ||
| - name: codacy upload | ||
| if: env.CODACY_PROJECT_TOKEN && matrix.env == 'environment_a' | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| python-codacy-coverage -v -r coverage.xml | ||
| env: | ||
| CODACY_PROJECT_TOKEN: ${{ secrets.CODACY_PROJECT_TOKEN }} | ||
| - name: codecov upload | ||
| uses: codecov/codecov-action@v1 | ||
| if: matrix.env == 'environment_a' | ||
| Safety-Bandit: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| env: [latest] | ||
| if: github.repository_owner == 'metoppv' | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: actions/cache@v2 | ||
| id: cache | ||
| env: | ||
| # Increase this value to reset cache | ||
| CACHE_NUMBER: 2 | ||
| with: | ||
| path: /usr/share/miniconda/envs/im${{ matrix.env }} | ||
| key: ${{ format('{0}-conda-improver-{1}-{2}-{3}', runner.os, env.CACHE_NUMBER, matrix.env, hashFiles(format('envs/{0}.yml', matrix.env))) }} | ||
| - name: conda env update | ||
| if: steps.cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda install -c conda-forge mamba | ||
| mamba env update -q --file envs/${{ matrix.env }}.yml --name im${{ matrix.env }} | ||
| - name: conda info | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| conda info | ||
| conda list | ||
| - name: safety | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| safety check || true | ||
| - name: bandit | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| bandit -r improver | ||
| Type-checking: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| env: [latest] | ||
| if: github.repository_owner == 'metoppv' | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: actions/cache@v2 | ||
| id: cache | ||
| env: | ||
| # Increase this value to reset cache | ||
| CACHE_NUMBER: 2 | ||
| with: | ||
| path: /usr/share/miniconda/envs/im${{ matrix.env }} | ||
| key: ${{ format('{0}-conda-improver-{1}-{2}-{3}', runner.os, env.CACHE_NUMBER, matrix.env, hashFiles(format('envs/{0}.yml', matrix.env))) }} | ||
| - name: conda env update | ||
| if: steps.cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda install -c conda-forge mamba | ||
| mamba env update -q --file envs/${{ matrix.env }}.yml --name im${{ matrix.env }} | ||
| - name: conda info | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| conda info | ||
| conda list | ||
| - name: mypy | ||
| run: | | ||
| source '/usr/share/miniconda/etc/profile.d/conda.sh' | ||
| conda activate im${{ matrix.env }} | ||
| mypy improver || true |
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