Code

Enh/docs html upload#4

Code

Open

Moritz-Alexander-Kern wants to merge 97 commits intomasterMoritz-Alexander-Kern/elephant-1:masterfrom enh/docs_html_uploadMoritz-Alexander-Kern/elephant-1:enh/docs_html_uploadCopy head branch name to clipboard

+7-1

Commits

Commits on Sep 15, 2020

• bug fixed dealing with units

  pbouss

  committed
  14ee56f

• fixed same unit error in trial shuffling

  pbouss

  committed
  4160ca0

Commits on Sep 18, 2020

• added Bielefeld fim.so and adapted filtering and added window param to fpgrowth

  stellalessandra

  committed
  1e9132b

• removed max_occ test

  stellalessandra

  committed
  e534c70

Commits on Sep 21, 2020

• Merge branch 'master' into enh/accelerated_spade

  stellalessandra

  committed
  c4c02dd

• further unit stuff

  pbouss

  committed
  3f1d2ac

Commits on Sep 24, 2020

• Merge remote-tracking branch 'origin/fix/bin_shuffling' into enh/accelerated_spade

  stellalessandra

  committed
  4a856d3

Commits on Jan 25, 2021

• fixed conflict when merging with master

  

  Alessandra Stella

  committed
  9b03add

• Merge branch 'master' into enh/accelerated_spade

  

  Alessandra Stella

  committed
  692862e

Commits on Jan 28, 2021

• Merge branch 'master' into enh/accelerated_spade

  

  Alessandra Stella

  committed
  3e7a8f7

Commits on Feb 8, 2021

• fixed merge

  stellalessandra

  committed
  b385033

Commits on Feb 9, 2021

• debugging for new fim version

  stellalessandra

  committed
  929e202

Commits on Feb 17, 2021

• enabled multithreading in fpgrowth

  stellalessandra

  committed
  4bb029f

• less verbose in spade

  stellalessandra

  committed
  bc8bf9f

Commits on Mar 26, 2021

• added correction factor to rate estimation

  pbouss

  committed
  1f40cd8

• only spiketrain with more than one spikes are corrected

  pbouss

  committed
  3f3cfd4

Commits on Apr 2, 2021

• Merge branch 'enh/accelerated_spade'

  stellalessandra

  committed
  aa07269

Commits on Apr 12, 2021

• added test of boundary correction

  pbouss

  committed
  e52dd19

• Merge branch 'master' into feature/boundary_correction_rate

  pbouss

  committed
  96de450

• PEP8

  pbouss

  committed
  cb331eb

• revert wrongly merged master

  pbouss

  committed
  efd55a0

Commits on Apr 26, 2021

• renamed to border correction

  pbouss

  committed
  88ff1d5

Commits on Aug 2, 2021

• removed paper citation

  pbouss

  committed
  00c2fed

Commits on Aug 4, 2021

• not-new release of scipy

  pbouss

  committed
  9cf8e8d

• not-new release of neo

  pbouss

  committed
  ad8c5b1

Commits on Aug 19, 2021

• worked in review, especially adding documentation

  pbouss

  committed
  7f28dbb

Commits on Sep 20, 2021

• First fix for unittests missing fake_neo objects

  mdenker

  committed
  c224e9d

• Merge branch 'master' into feature/boundary_correction_rate

  pbouss

  committed
  520c810

Commits on Dec 13, 2021

• updated UE tutorial and requirements to use nixio 1.5.0 (INM-6#86)

  Moritz-Alexander-Kern

  authored
  c071f69

• updated links for datasets used in tutorials asset and UE

  

  Moritz-Alexander-Kern

  committed
  6ca6dd6

• use 'read only' to assure backwards compatibility

  

  Moritz-Alexander-Kern

  committed
  aa1d4a4

• reset outputs of notebook

  

  Moritz-Alexander-Kern

  committed
  b7954e9

Commits on Jan 28, 2022

• Changed Typo

  Show description for 78131cc
  

  pbouss

  and

  Moritz-Alexander-Kern

  authored
  78131cc

Commits on Feb 3, 2022

• Fixed all GetAllObjsTestCase unit tests

  mdenker

  committed
  b13923a

• Started work on Events test case

  mdenker

  committed
  83864c0

Commits on Feb 4, 2022

• Fixed Events test case

  mdenker

  committed
  5e8747f

• Fixed Epochs and Spiketrain tests

  mdenker

  committed
  0655c49

• Starting to fix ExtractNeoAttrs

  mdenker

  committed
  24b5b76

• 7 more failing tests for ExtractNeoAttrs

  mdenker

  committed
  454fc17

• All neo_tools tests fixed for Neo 0.10

  mdenker

  committed
  efd152c

• Enabled dataset generators from neo 0.10.0

  mdenker

  committed
  35e78be

Commits on Feb 7, 2022

• This PR adds SpikeTrainList as output of get_all_spiketrains()`

  mdenker

  committed
  29727f2

• Use SpikeTrainList, work around SpikeTrainList.extend() bug.

  mdenker

  committed
  6d5b88f

• Fix pandas_bridge tests to work without fake_neo()

  mdenker

  committed
  f9beee8

• PEP8 Line length corrections

  mdenker

  committed
  0d3c947

• More PEP8 finishes

  mdenker

  committed
  db01e3f

• Yet more PEP8 finishes

  mdenker

  committed
  d266764

• Last PEP8 finish

  mdenker

  committed
  ee4e428

• Handle SpikeTrainList as input for BinnedSpikeTrain

  mdenker

  committed
  95f84bf

• Add corresponding regression test

  mdenker

  committed
  0e354f2

• PEP 8; avoid universal try-except clause

  mdenker

  committed
  00dfa38

Commits on Feb 8, 2022

• Fixed SpikeTrainList issue in spike train synchrony class

  mdenker

  committed
  2792d0a

• Fixed SpikeTrainList issue in SPADE

  mdenker

  committed
  f82e080

• Pep8 issue

  mdenker

  committed
  6d7790b

Commits on Feb 9, 2022

• Update elephant/neo_tools.py

  Show description for 81fd5c4
  

  Moritz-Alexander-Kern

  and

  mdenker

  authored
  81fd5c4

Commits on Feb 11, 2022

• added CI.yml containing workflows

  

  Moritz-Alexander-Kern

  committed
  4b4b523

• added badge for CI tests to README.md

  

  Moritz-Alexander-Kern

  committed
  08e427a

• restructured requirements, environment.yml refactored to environment-docs.yml and environment-tests.yml.

  

  Moritz-Alexander-Kern

  committed
  39e69ba

• adapted runners according to new new .yml files

  

  Moritz-Alexander-Kern

  committed
  f3c5ef1

• re-add environment.yml for Travis, to be removed together with travis.yml

  

  Moritz-Alexander-Kern

  committed
  21f6d77

Commits on Feb 14, 2022

• Merge branch 'master' into feature/boundary_correction_rate

  pbouss

  committed
  46325ba

• instantaneous rate test -> more spiketrains to make it run

  pbouss

  committed
  e4c2cef

Commits on Feb 15, 2022

• fixed deprecation warnings, replaced homogeneous_poisson_process with StationaryPoissonProcess

  

  Moritz-Alexander-Kern

  committed
  bf3d706

Commits on Feb 17, 2022

• added import for scipy.signal

  

  Moritz-Alexander-Kern

  committed
  be17e58

Commits on Feb 18, 2022

• fixed size of output for instantaneous_rate, edited unittests accordingly

  

  Moritz-Alexander-Kern

  committed
  ed9d93b

• test to check length of outputs

  

  Moritz-Alexander-Kern

  committed
  4493a74

Commits on Mar 1, 2022

• added unittest to check consistency of rate times (should be multiple of sampling period), to get consistent ouput sizes, cutting of wings is done by fft convolve for center_kernel=True

  

  Moritz-Alexander-Kern

  committed
  130ac38

• fixed pep8, added comments, restructure

  

  Moritz-Alexander-Kern

  committed
  be4d214

Commits on Mar 9, 2022

• added include endpoint option

  

  Moritz-Alexander-Kern

  committed
  fdaba6d

Commits on Mar 10, 2022

• This removes support of RrcordingChannelGroup in CSD methods.

  mdenker

  committed
  3a2f6e9

• Changed requirements to Neo >=0.10.0

  mdenker

  committed
  aec3b38

• Fix spiketrain lists in instantaneous rate.

  mdenker

  committed
  9b9ab3a

Commits on Mar 11, 2022

• added notes to docstrings, reformat docstrings and code, removed endpoint option

  

  Moritz-Alexander-Kern

  committed
  2904cee

Commits on Mar 14, 2022

• update requirements in environment-*.yml to neo>=0.10.0

  

  Moritz-Alexander-Kern

  committed
  b1ec09d

• updated .yml files to python version 3.7

  

  Moritz-Alexander-Kern

  committed
  203dbc9

• removed python 3.6 from docs 'install.rst', added python version requirement to setup.py

  

  Moritz-Alexander-Kern

  committed
  6cead92

• Merge branch 'master' into feature/github_actions_CI

  Moritz-Alexander-Kern

  authored
  727fdc6

• rename travis conda 3.6 extras,opencl runner

  

  Moritz-Alexander-Kern

  committed
  0459e76

• Merge remote-tracking branch 'origin/feature/github_actions_CI' into feature/github_actions_CI

  

  Moritz-Alexander-Kern

  committed
  aca906c

• updated build_wheels workflow to exclude python 3.6

  

  Moritz-Alexander-Kern

  committed
  ec9e07e

• removed redundant line

  

  Moritz-Alexander-Kern

  committed
  aef297b

• changed structure of installation for docs runner

  

  Moritz-Alexander-Kern

  committed
  84b983e

• added extras to docs runner

  

  Moritz-Alexander-Kern

  committed
  e015862

• Merge remote-tracking branch 'origin/fix/spiketrainlist_test'

  

  Moritz-Alexander-Kern

  committed
  d672722

• Merge remote-tracking branch 'origin/fix/fakeneo_missing'

  

  Moritz-Alexander-Kern

  committed
  98aa581

• Merge remote-tracking branch 'origin/feature/github_actions_CI'

  

  Moritz-Alexander-Kern

  committed
  0dc154d

• Merge remote-tracking branch 'origin/fix/update_nixio_1.5.0'

  

  Moritz-Alexander-Kern

  committed
  76477ec

• Merge remote-tracking branch 'origin/feature/boundary_correction_rate'

  

  Moritz-Alexander-Kern

  committed
  b2ca7a1

• Merge branch 'fix/instantaneous_rate_one_point_less'

  Show description for 6efbd7e
  

  Moritz-Alexander-Kern

  committed
  6efbd7e

• merged changes for instantaneous rate

  

  Moritz-Alexander-Kern

  committed
  a996935

• changed trigger for github actions CI

  

  Moritz-Alexander-Kern

  committed
  d08c7c9

Commits on Mar 23, 2022

• upload docs build html as artifact

  

  Moritz-Alexander-Kern

  committed
  26ab04e

• conda runner, use newest pytest version

  

  Moritz-Alexander-Kern

  committed
  5fef259

Commits on Jul 6, 2022

• merged master into docs_html_upload

  

  Moritz-Alexander-Kern

  committed
  5a4f91e

• fixed .yml

  

  Moritz-Alexander-Kern

  committed
  0c2546c

• fixed indentation

  

  Moritz-Alexander-Kern

  committed
  ba00dae

Commits on Jul 26, 2022

• Update CI.yml

  Moritz-Alexander-Kern

  authored
  00e99ab