test: fix mypy error #2186
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Linux | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| paths: | |
| - '**' | |
| tags: | |
| - 'v*.*.*' | |
| pull_request: | |
| branches: | |
| - 'master' | |
| paths: | |
| - '**' | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 60 | |
| env: | |
| COVERAGE_PROCESS_START: "${{ github.workspace }}/.coveragerc" | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| matrix: | |
| julia-version: ['1'] | |
| python-version: ['3.12'] | |
| os: [ubuntu-latest] | |
| test-id: [main] | |
| include: | |
| - julia-version: '1.10' | |
| python-version: '3.8' | |
| os: ubuntu-latest | |
| test-id: include | |
| - julia-version: '1' | |
| python-version: '3.12' | |
| os: ubuntu-latest | |
| test-id: include | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Set up Julia" | |
| uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.julia-version }} | |
| - name: "Cache Julia" | |
| uses: julia-actions/cache@v2 | |
| with: | |
| cache-name: ${{ matrix.os }}-test-${{ matrix.julia-version }}-${{ matrix.python-version }} | |
| cache-packages: false | |
| - name: "Set up Python" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: "Install PySR" | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install . | |
| python -c 'import pysr' | |
| - name: "Assert Julia version" | |
| if: ${{ matrix.julia-version != '1'}} | |
| run: python3 -c "from pysr import jl; assert jl.VERSION.major == jl.seval('v\"${{ matrix.julia-version }}\"').major; assert jl.VERSION.minor == jl.seval('v\"${{ matrix.julia-version }}\"').minor" | |
| - name: "Install test dependencies" | |
| run: pip install coverage coveralls pytest nbval | |
| - name: "Set up coverage for subprocesses" | |
| run: echo 'import coverage; coverage.process_startup()' > "${{ github.workspace }}/sitecustomize.py" | |
| - name: "Run tests" | |
| run: coverage run -m pysr test main,cli,startup | |
| - name: "Install JAX" | |
| run: pip install jax jaxlib # (optional import) | |
| if: ${{ matrix.test-id == 'main' }} | |
| - name: "Run JAX tests" | |
| run: coverage run --append -m pysr test jax | |
| if: ${{ matrix.test-id == 'main' }} | |
| - name: "Install Torch" | |
| run: pip install torch # (optional import) | |
| if: ${{ matrix.test-id == 'main' }} | |
| - name: "Run Torch tests" | |
| run: coverage run --append -m pysr test torch | |
| if: ${{ matrix.test-id == 'main' }} | |
| - name: "Coveralls" | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: test-${{ matrix.julia-version }}-${{ matrix.python-version }}-${{ matrix.test-id }} | |
| COVERALLS_PARALLEL: true | |
| run: coveralls --service=github | |
| dev_install: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.12'] | |
| julia-version: ['1'] | |
| include: | |
| - os: ubuntu-latest | |
| python-version: '3.9' | |
| julia-version: '1.10' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| - name: "Install PySR" | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install . | |
| - name: "Run development test" | |
| run: PYSR_TEST_JULIA_VERSION=${{ matrix.julia-version }} PYSR_TEST_PYTHON_VERSION=${{ matrix.python-version }} python -m pysr test dev | |
| conda_test: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: ['3.12'] | |
| os: ['ubuntu-latest'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Cache conda" | |
| uses: actions/cache@v4 | |
| env: | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| - name: "Set up Conda" | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| auto-activate-base: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: pysr-test | |
| environment-file: environment.yml | |
| - name: "Cache Julia" | |
| uses: julia-actions/cache@v2 | |
| with: | |
| cache-name: ${{ matrix.os }}-conda-${{ matrix.python-version }} | |
| cache-packages: false | |
| - name: "Install PySR" | |
| run: | | |
| python3 -m pip install . | |
| python3 -c 'import pysr' | |
| - name: "Run tests" | |
| run: cd /tmp && python -m pysr test main | |
| coveralls: | |
| name: Indicate completion to coveralls.io | |
| needs: | |
| - test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| pip install coveralls | |
| coveralls --finish | |
| types: | |
| name: Check types | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: | |
| - '3.12' | |
| - '3.8' | |
| os: ['ubuntu-latest'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Set up Python" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: "Install PySR and all dependencies" | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install . | |
| pip install mypy | |
| - name: "Install additional dependencies" | |
| run: python -m pip install jax jaxlib torch | |
| if: ${{ matrix.python-version != '3.8' }} | |
| - name: "Run mypy" | |
| run: python -m mypy --install-types --non-interactive pysr | |
| if: ${{ matrix.python-version != '3.8' }} | |
| - name: "Run compatible mypy" | |
| run: python -m mypy --ignore-missing-imports pysr | |
| if: ${{ matrix.python-version == '3.8' }} |