validation #691
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| name: validation | |
| on: | |
| push: | |
| schedule: | |
| - cron: "0 0 * * *" | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/metabolicatlas/memote-docker:0.13 | |
| volumes: | |
| - ${{ github.workspace }}:/project:rw | |
| options: --user root --workdir /project | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Fetch list of repositories | |
| run: | | |
| git config --global --add safe.directory /__w/standard-GEM-validation/standard-GEM-validation | |
| python -c 'import runner; runner.matrix()' | |
| - name: Commit index of standard-GEMs | |
| uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| commit_user_name: validation-bot | |
| commit_message: update index of standard-GEMs | |
| file_pattern: index.json | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Define job matrix from index | |
| id: set-matrix | |
| run: echo "matrix=$(cat index.json)" >> $GITHUB_OUTPUT | |
| validate: | |
| needs: setup | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/metabolicatlas/memote-docker:0.13 | |
| volumes: | |
| - ${{ github.workspace }}:/project:rw | |
| options: --user root --workdir /project | |
| continue-on-error: true | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| gem: ${{ fromJSON(needs.setup.outputs.matrix) }} | |
| # max-parallel: 1 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Validate repository | |
| run: | | |
| git config --global --add safe.directory /__w/standard-GEM-validation/standard-GEM-validation | |
| python -c 'import runner; runner.validate("${{ matrix.gem }}")' | |
| - name: Update branch | |
| run: git pull --ff | |
| - name: Auto-commit results | |
| uses: stefanzweifel/git-auto-commit-action@v5 | |
| with: | |
| commit_user_name: validation-bot | |
| commit_message: update validation results for ${{ matrix.gem }} | |
| file_pattern: results/*.json | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |