Delete job files when rerunning; customizable execution command #661
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| name: testing | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| pull_request: | |
| # Cancel running workflows when additional changes are pushed | |
| # https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#example-using-a-fallback-value | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| cache: pip | |
| cache-dependency-path: pyproject.toml | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements/requirements.txt | |
| pip install .[dev] | |
| - name: Lint | |
| run: pre-commit run --all-files --show-diff-on-failure | |
| test: | |
| services: | |
| local_mongodb: | |
| image: mongo:5.0 | |
| ports: | |
| - 27017:27017 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| cache-dependency-path: pyproject.toml | |
| - name: Install mongo-tools | |
| run: | | |
| wget https://fastdl.mongodb.org/tools/db/mongodb-database-tools-ubuntu2204-x86_64-100.10.0.deb | |
| sudo apt install ./mongodb-database-tools-*-100.10.0.deb | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements/requirements.txt | |
| pip install .[tests] | |
| - name: Unit tests | |
| run: COVERAGE_FILE=.coverage.1 pytest --cov=jobflow_remote --cov-report= --cov-config pyproject.toml --ignore tests/integration | |
| - name: Integration tests | |
| run: COVERAGE_FILE=.coverage.2 pytest --cov=jobflow_remote --cov-report= --cov-config pyproject.toml tests/integration | |
| # combining the reports with --cov-append did not seem to work | |
| - name: Generate coverage report | |
| run: | | |
| coverage combine .coverage.1 .coverage.2 | |
| coverage xml | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| docs: | |
| name: Build documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| fetch-depth: 0 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Install docs dependencies | |
| run: | | |
| python -m pip install -U pip | |
| pip install -U setuptools wheel | |
| # Required to generate rst files from markdown | |
| sudo apt install pandoc | |
| pip install -r requirements/requirements.txt | |
| pip install .[docs] | |
| - name: Build Sphinx docs | |
| working-directory: doc | |
| run: | | |
| # cannot use sphinx build directly as the makefile handles generation | |
| # of some rst files | |
| make html |