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22 Open 229 Closed
22 Open 229 Closed
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Issues list

I have included the grouping information, but I can't determine their roles.
#354 opened Nov 19, 2024 by M-jk22
1
Should not perform any direct filtering on da_result before executing groupNhoods
#353 opened Nov 14, 2024 by isaamael
1
Getting error in buildNhoodGraph
#350 opened Oct 24, 2024 by sepehrgolriz
9
Error in S4Vectors
#348 opened Sep 2, 2024 by avfentor
1
buildGraph error
#347 opened Aug 26, 2024 by yangjie4546
5
Predefined Graph Import Still Not Available to Use documentation Improvements or additions to documentation
#318 opened Apr 10, 2024 by DarioS
6
Error: (converted from warning) 'as(<dgTMatrix>, "dgCMatrix")' is deprecated.
#314 opened Mar 15, 2024 by Lil-5
8
Results Changed
#313 opened Mar 13, 2024 by ShashTrip1
2
Reorder Ident in plotDAbeeswarm
#311 opened Mar 9, 2024 by ShashTrip1
4
error in makeNhoods
#307 opened Feb 15, 2024 by GrigoriiNos
3
How to implement more complex contrast formulas
#305 opened Feb 2, 2024 by CarlottaHS
5
scVI corrected dimensions with MiloR
#300 opened Jan 5, 2024 by LinearParadox
1
Choice of fdr.weighting in testNhoods
#299 opened Dec 22, 2023 by bazelep
2
Can I run calcNhoodDistance before countCells
#293 opened Nov 2, 2023 by yulijia
3
Problem in buildNhoodGraph on a large dataset
#290 opened Sep 1, 2023 by moinfar
6
merging Nhood with logFC of opposite sign bug Something isn't working
#270 opened Mar 3, 2023 by gianfilippo
@MikeDMorgan
19
support for time points from same donor
#268 opened Feb 24, 2023 by zia1138
11
Overlay DA neighborhoods on embedding
#251 opened Nov 16, 2022 by mdmanurung
Annotating nhoods by continuous covariates
#218 opened May 10, 2022 by emdann
1
[Minor] uniform parameter name for name of reducedDim slot
#106 opened Jan 27, 2021 by emdann
Labelling from rowData in plotNhoodExpression
#55 opened Oct 20, 2020 by emdann
@emdann
1
miloR::graph() conflicts with igraph::graph() enhancement New feature or request
#16 opened Aug 21, 2020 by MikeDMorgan
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