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truncate image paths in XMLs for BIAS import #93

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merged 3 commits into from
Nov 20, 2024

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sophiamaedler
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this fixes needing to manually update the complete file paths if images are relocated. As the XML should always be in the same folder as the generated TIF files there is no need for absolute file path names.

@sophiamaedler sophiamaedler changed the title truncate image paths in BIAS generated XML truncate image paths in XMLs for BIAS import Nov 5, 2024
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XML file truncation has been solved. Rescale issue for thumbnails still needs to be addressed.

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The change for the XML output worked. XML output can now be used directly as long as the XML file is kept in the same folder as the stitched images.

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The change worked. XML output can now be used directly as long as the XML file is kept in the same folder as the stitched images.

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Rescale issue is only apparent during thumbnail generation. For the actual stitching, turning off rescaling works.

rescaling now can also be turned off for thumbnail generation
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Rescale issue is only apparent during thumbnail generation. For the actual stitching, turning off rescaling works.

It should now also be fixed for thumbnail generation.

@sophiamaedler sophiamaedler merged commit 53ce483 into main Nov 20, 2024
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@sophiamaedler sophiamaedler deleted the fix_XML_BIAS_import branch November 20, 2024 16:31
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2 participants