#296: declare variables in __init__

MannLabs · Aug 7, 2024 · 430b772 · 430b772
1 parent 98a4b48
commit 430b772
Showing 1 changed file with 8 additions and 3 deletions.
diff --git a/alphadia/workflow/base.py b/alphadia/workflow/base.py
@@ -45,9 +45,14 @@ def __init__(
             Configuration for the workflow. This will be used to initialize the calibration manager and fdr manager
 
         """
-        self._instance_name = instance_name
-        self._parent_path = os.path.join(config["output"], TEMP_FOLDER)
-        self._config = config
+        self._instance_name: str = instance_name
+        self._parent_path: str = os.path.join(config["output"], TEMP_FOLDER)
+        self._config: dict = config
+        self.reporter: reporting.Pipeline | None = None
+        self._dia_data: bruker.TimsTOFTranspose | alpharaw.AlphaRaw | None = None
+        self._spectral_library: SpecLibBase | None = None
+        self._calibration_manager: manager.CalibrationManager | None = None
+        self._optimization_manager: manager.OptimizationManager | None = None
 
         if not os.path.exists(self.parent_path):
             logger.info(f"Creating parent folder for workflows at {self.parent_path}")