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Refactor readers v #247

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Refactor readers v #247

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mschwoer
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@mschwoer mschwoer commented Nov 19, 2024

move all modification mapping-related logic to a dedicated class

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@mschwoer mschwoer marked this pull request as ready for review November 19, 2024 14:48
@@ -212,7 +212,6 @@ library_reader_base:
reader_type: library_reader_base
rt_unit: irt
fixed_C57: False
csv_sep: "\t"
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We already used "on-the-fly" sep detecting, right?

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yes, this seemed to be just a leftover (wasn't used)

@@ -0,0 +1,170 @@
"""Module to handle modification mappings for different search engines."""
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Good idea!!

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+1

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LGTM

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