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miguelgondu committed Apr 12, 2024
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44 changes: 22 additions & 22 deletions _autosummary/poli.core.abstract_black_box.AbstractBlackBox.html
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<p aria-level="2" class="caption" role="heading"><span class="caption-text">Objective functions</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/all_objectives.html">All objective functions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/white_noise.html">White Noise objective function</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/albuterol_similarity.html">Albuterol Similarity (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/aloha.html">Aloha objective function</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/toy_continuous_problems.html">Toy continuous objective functions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/rdkit_qed.html">Quantitative Estimate of Druglikeness (QED)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/rdkit_logp.html">Log-solubility (logP)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/amlodipine_mpo.html">Amlodipine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/celecoxib_rediscovery.html">Celecoxib Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/deco_hop.html">Deco Hop (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/dockstring.html">dockstring</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/gsk3_beta.html">GSK3β (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/drd2_docking.html">DRD2 Docking (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/drd3_docking.html">DRD3 docking (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/celecoxib_rediscovery.html">Celecoxib Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/thiothixene_rediscovery.html">Thiothixene Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/troglitazone_rediscovery.html">Troglitazone Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/amlodipine_mpo.html">Amlodipine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/fexofenadine_mpo.html">Fexofenadine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/osimetrinib_mpo.html">Osimetrinib MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/ranolazine_mpo.html">Ranolazine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/sitagliptin_mpo.html">Sitagliptin MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/zaleplon_mpo.html">Zaleplon MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/deco_hop.html">Deco Hop (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/scaffold_hop.html">Scaffold Hop (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/foldx_sasa.html">Protein solvent accessibility (using <code class="docutils literal notranslate"><span class="pre">foldx</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/foldx_stability.html">Protein stability (using <code class="docutils literal notranslate"><span class="pre">foldx</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/gsk3_beta.html">GSK3β (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/isomer_c7h8n2o2.html">Isomer C7H8N2O2 (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/isomer_c9h10n2o2pf2cl.html">Isomer C9H10N2O2PF2Cl (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/rdkit_logp.html">Log-solubility (logP)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/median_1.html">Median 1 (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/median_2.html">Median 2 (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/valsartan_smarts.html">Valsartan SMARTS (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/penalized_logp_lambo.html">Penalized logP (using <code class="docutils literal notranslate"><span class="pre">lambo</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/sa_tdc.html">Synthetic Accessibility (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/albuterol_similarity.html">Albuterol Similarity (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/mestranol_similarity.html">Mestranol Similarity (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/drd2_docking.html">DRD2 Docking (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/foldx_stability.html">Protein stability (using <code class="docutils literal notranslate"><span class="pre">foldx</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/foldx_sasa.html">Protein solvent accessibility (using <code class="docutils literal notranslate"><span class="pre">foldx</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/osimetrinib_mpo.html">Osimetrinib MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/penalized_logp_lambo.html">Penalized logP (using <code class="docutils literal notranslate"><span class="pre">lambo</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/rdkit_qed.html">Quantitative Estimate of Druglikeness (QED)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/ranolazine_mpo.html">Ranolazine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/RaSP.html">Rapid Stability Predictions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/sa_tdc.html">Synthetic Accessibility (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/scaffold_hop.html">Scaffold Hop (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/sitagliptin_mpo.html">Sitagliptin MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/thiothixene_rediscovery.html">Thiothixene Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/toy_continuous_problems.html">Toy continuous objective functions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/troglitazone_rediscovery.html">Troglitazone Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/valsartan_smarts.html">Valsartan SMARTS (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/white_noise.html">White Noise objective function</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/zaleplon_mpo.html">Zaleplon MPO (using TDC)</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Optimizers</span></p>
<ul class="nav bd-sidenav">
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44 changes: 22 additions & 22 deletions _autosummary/poli.core.abstract_black_box.NegativeBlackBox.html
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<p aria-level="2" class="caption" role="heading"><span class="caption-text">Objective functions</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/all_objectives.html">All objective functions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/white_noise.html">White Noise objective function</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/albuterol_similarity.html">Albuterol Similarity (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/aloha.html">Aloha objective function</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/toy_continuous_problems.html">Toy continuous objective functions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/rdkit_qed.html">Quantitative Estimate of Druglikeness (QED)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/rdkit_logp.html">Log-solubility (logP)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/amlodipine_mpo.html">Amlodipine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/celecoxib_rediscovery.html">Celecoxib Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/deco_hop.html">Deco Hop (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/dockstring.html">dockstring</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/gsk3_beta.html">GSK3β (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/drd2_docking.html">DRD2 Docking (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/drd3_docking.html">DRD3 docking (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/celecoxib_rediscovery.html">Celecoxib Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/thiothixene_rediscovery.html">Thiothixene Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/troglitazone_rediscovery.html">Troglitazone Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/amlodipine_mpo.html">Amlodipine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/fexofenadine_mpo.html">Fexofenadine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/osimetrinib_mpo.html">Osimetrinib MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/ranolazine_mpo.html">Ranolazine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/sitagliptin_mpo.html">Sitagliptin MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/zaleplon_mpo.html">Zaleplon MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/deco_hop.html">Deco Hop (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/scaffold_hop.html">Scaffold Hop (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/foldx_sasa.html">Protein solvent accessibility (using <code class="docutils literal notranslate"><span class="pre">foldx</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/foldx_stability.html">Protein stability (using <code class="docutils literal notranslate"><span class="pre">foldx</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/gsk3_beta.html">GSK3β (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/isomer_c7h8n2o2.html">Isomer C7H8N2O2 (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/isomer_c9h10n2o2pf2cl.html">Isomer C9H10N2O2PF2Cl (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/rdkit_logp.html">Log-solubility (logP)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/median_1.html">Median 1 (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/median_2.html">Median 2 (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/valsartan_smarts.html">Valsartan SMARTS (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/penalized_logp_lambo.html">Penalized logP (using <code class="docutils literal notranslate"><span class="pre">lambo</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/sa_tdc.html">Synthetic Accessibility (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/albuterol_similarity.html">Albuterol Similarity (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/mestranol_similarity.html">Mestranol Similarity (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/drd2_docking.html">DRD2 Docking (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/foldx_stability.html">Protein stability (using <code class="docutils literal notranslate"><span class="pre">foldx</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/foldx_sasa.html">Protein solvent accessibility (using <code class="docutils literal notranslate"><span class="pre">foldx</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/osimetrinib_mpo.html">Osimetrinib MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/penalized_logp_lambo.html">Penalized logP (using <code class="docutils literal notranslate"><span class="pre">lambo</span></code>)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/rdkit_qed.html">Quantitative Estimate of Druglikeness (QED)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/ranolazine_mpo.html">Ranolazine MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/RaSP.html">Rapid Stability Predictions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/sa_tdc.html">Synthetic Accessibility (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/scaffold_hop.html">Scaffold Hop (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/sitagliptin_mpo.html">Sitagliptin MPO (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/thiothixene_rediscovery.html">Thiothixene Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/toy_continuous_problems.html">Toy continuous objective functions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/troglitazone_rediscovery.html">Troglitazone Rediscovery (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/valsartan_smarts.html">Valsartan SMARTS (using TDC)</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/white_noise.html">White Noise objective function</a></li>
<li class="toctree-l1"><a class="reference internal" href="../using_poli/objective_repository/zaleplon_mpo.html">Zaleplon MPO (using TDC)</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Optimizers</span></p>
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