Update documentation

_autosummary/poli.tests.benchmarks.html

@@ -724,6 +724,9 @@ <h1>poli.tests.benchmarks</h1>
 <col style="width: 90%" />
 </colgroup>
 <tbody>
+<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.benchmarks.test_benchmark_creation.html#module-poli.tests.benchmarks.test_benchmark_creation" title="poli.tests.benchmarks.test_benchmark_creation"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.benchmarks.test_benchmark_creation</span></code></a></p></td>
+<td><p>Test suite for benchmarks.</p></td>
+</tr>
 </tbody>
 </table>
 </section>

_autosummary/poli.tests.benchmarks.test_benchmark_creation.html

@@ -127,8 +127,6 @@
 
 
 
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-
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@@ -717,8 +715,31 @@ <h1>poli.tests.benchmarks.test_benchmark_creation</h1>
 <div id="searchbox"></div>
                 <article class="bd-article">
 
-  <section id="poli-tests-benchmarks-test-benchmark-creation">
-<h1>poli.tests.benchmarks.test_benchmark_creation<a class="headerlink" href="#poli-tests-benchmarks-test-benchmark-creation" title="Permalink to this heading">#</a></h1>
+  <section id="module-poli.tests.benchmarks.test_benchmark_creation">
+<span id="poli-tests-benchmarks-test-benchmark-creation"></span><h1>poli.tests.benchmarks.test_benchmark_creation<a class="headerlink" href="#module-poli.tests.benchmarks.test_benchmark_creation" title="Permalink to this heading">#</a></h1>
+<p>Test suite for benchmarks.</p>
+<p>This test suite only verifies that the benchmarks can
+be created without errors. It does not check the correctness
+of the benchmarks. In the case of PMO and Guacamol, those
+tests are already covered by the tests in objective_repository.</p>
+<p class="rubric">Functions</p>
+<table class="autosummary longtable table autosummary">
+<colgroup>
+<col style="width: 10%" />
+<col style="width: 90%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">test_creating_embedded_toy_continuous_functions_benchmark</span></code>()</p></td>
+<td><p></p></td>
+</tr>
+<tr class="row-even"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">test_creating_toy_continuous_functions_benchmark</span></code>()</p></td>
+<td><p></p></td>
+</tr>
+<tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">test_names_from_guacamol_benchmark</span></code>()</p></td>
+<td><p></p></td>
+</tr>
+</tbody>
+</table>
 </section>
 
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_autosummary/poli.tests.html

@@ -742,13 +742,16 @@ <h1>poli.tests</h1>
 <tr class="row-even"><td><p><a class="reference internal" href="poli.tests.test_core_promises.html#module-poli.tests.test_core_promises" title="poli.tests.test_core_promises"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.test_core_promises</span></code></a></p></td>
 <td><p>This test suite contains the core promises we make to the user.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.test_lambda_black_box.html#module-poli.tests.test_lambda_black_box" title="poli.tests.test_lambda_black_box"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.test_lambda_black_box</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.test_data_packages.html#module-poli.tests.test_data_packages" title="poli.tests.test_data_packages"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.test_data_packages</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="poli.tests.test_seeding.html#module-poli.tests.test_seeding" title="poli.tests.test_seeding"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.test_seeding</span></code></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="poli.tests.test_lambda_black_box.html#module-poli.tests.test_lambda_black_box" title="poli.tests.test_lambda_black_box"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.test_lambda_black_box</span></code></a></p></td>
+<td><p></p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.test_seeding.html#module-poli.tests.test_seeding" title="poli.tests.test_seeding"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.test_seeding</span></code></a></p></td>
 <td><p>This test module tests whether the seeding works in the white noise example.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.util.html#module-poli.tests.util" title="poli.tests.util"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.util</span></code></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="poli.tests.util.html#module-poli.tests.util" title="poli.tests.util"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.util</span></code></a></p></td>
 <td><p></p></td>
 </tr>
 </tbody>

_autosummary/poli.tests.registry.basic_objectives.html

@@ -727,6 +727,9 @@ <h1>poli.tests.registry.basic_objectives</h1>
 <tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.registry.basic_objectives.test_basic_objectives.html#module-poli.tests.registry.basic_objectives.test_basic_objectives" title="poli.tests.registry.basic_objectives.test_basic_objectives"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.basic_objectives.test_basic_objectives</span></code></a></p></td>
 <td><p></p></td>
 </tr>
+<tr class="row-even"><td><p><a class="reference internal" href="poli.tests.registry.basic_objectives.test_budget_exhaustion.html#module-poli.tests.registry.basic_objectives.test_budget_exhaustion" title="poli.tests.registry.basic_objectives.test_budget_exhaustion"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.basic_objectives.test_budget_exhaustion</span></code></a></p></td>
+<td><p>Tests for the budget exhaustion inside objective functions.</p></td>
+</tr>
 </tbody>
 </table>
 </section>

_autosummary/poli.tests.registry.basic_objectives.test_budget_exhaustion.html

@@ -127,8 +127,6 @@
 
 
 
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@@ -717,8 +715,24 @@ <h1>poli.tests.registry.basic_objectives.test_budget_exhaustion</h1>
 <div id="searchbox"></div>
                 <article class="bd-article">
 
-  <section id="poli-tests-registry-basic-objectives-test-budget-exhaustion">
-<h1>poli.tests.registry.basic_objectives.test_budget_exhaustion<a class="headerlink" href="#poli-tests-registry-basic-objectives-test-budget-exhaustion" title="Permalink to this heading">#</a></h1>
+  <section id="module-poli.tests.registry.basic_objectives.test_budget_exhaustion">
+<span id="poli-tests-registry-basic-objectives-test-budget-exhaustion"></span><h1>poli.tests.registry.basic_objectives.test_budget_exhaustion<a class="headerlink" href="#module-poli.tests.registry.basic_objectives.test_budget_exhaustion" title="Permalink to this heading">#</a></h1>
+<p>Tests for the budget exhaustion inside objective functions.</p>
+<p class="rubric">Functions</p>
+<table class="autosummary longtable table autosummary">
+<colgroup>
+<col style="width: 10%" />
+<col style="width: 90%" />
+</colgroup>
+<tbody>
+<tr class="row-odd"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">test_budget_exhausts</span></code>()</p></td>
+<td><p></p></td>
+</tr>
+<tr class="row-even"><td><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">test_num_evaluation_tracks_correctly</span></code>()</p></td>
+<td><p></p></td>
+</tr>
+</tbody>
+</table>
 </section>
 
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_autosummary/poli.tests.registry.chemistry.html

@@ -724,6 +724,9 @@ <h1>poli.tests.registry.chemistry</h1>
 <col style="width: 90%" />
 </colgroup>
 <tbody>
+<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.registry.chemistry.test_chemistry_objectives.html#module-poli.tests.registry.chemistry.test_chemistry_objectives" title="poli.tests.registry.chemistry.test_chemistry_objectives"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.chemistry.test_chemistry_objectives</span></code></a></p></td>
+<td><p></p></td>
+</tr>
 </tbody>
 </table>
 </section>

_autosummary/poli.tests.registry.chemistry.test_chemistry_objectives.html

@@ -127,8 +127,6 @@
 
 
 
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-
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@@ -717,8 +715,8 @@ <h1>poli.tests.registry.chemistry.test_chemistry_objectives</h1>
 <div id="searchbox"></div>
                 <article class="bd-article">
 
-  <section id="poli-tests-registry-chemistry-test-chemistry-objectives">
-<h1>poli.tests.registry.chemistry.test_chemistry_objectives<a class="headerlink" href="#poli-tests-registry-chemistry-test-chemistry-objectives" title="Permalink to this heading">#</a></h1>
+  <section id="module-poli.tests.registry.chemistry.test_chemistry_objectives">
+<span id="poli-tests-registry-chemistry-test-chemistry-objectives"></span><h1>poli.tests.registry.chemistry.test_chemistry_objectives<a class="headerlink" href="#module-poli.tests.registry.chemistry.test_chemistry_objectives" title="Permalink to this heading">#</a></h1>
 </section>
 
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_autosummary/poli.tests.registry.html

@@ -742,10 +742,13 @@ <h1>poli.tests.registry</h1>
 <tr class="row-even"><td><p><a class="reference internal" href="poli.tests.registry.test_multi_objective_and_negative.html#module-poli.tests.registry.test_multi_objective_and_negative" title="poli.tests.registry.test_multi_objective_and_negative"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.test_multi_objective_and_negative</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.registry.toy_continuous_problems.html#module-poli.tests.registry.toy_continuous_problems" title="poli.tests.registry.toy_continuous_problems"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.toy_continuous_problems</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.registry.test_passing_array_of_strings.html#module-poli.tests.registry.test_passing_array_of_strings" title="poli.tests.registry.test_passing_array_of_strings"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.test_passing_array_of_strings</span></code></a></p></td>
+<td><p>This module tests whether giving black boxes an array of b strings is equivalent to giving them an array of [b, L] tokens.</p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="poli.tests.registry.toy_continuous_problems.html#module-poli.tests.registry.toy_continuous_problems" title="poli.tests.registry.toy_continuous_problems"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.toy_continuous_problems</span></code></a></p></td>
 <td><p></p></td>
 </tr>
-<tr class="row-even"><td><p><a class="reference internal" href="poli.tests.registry.toy_discrete_problems.html#module-poli.tests.registry.toy_discrete_problems" title="poli.tests.registry.toy_discrete_problems"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.toy_discrete_problems</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.registry.toy_discrete_problems.html#module-poli.tests.registry.toy_discrete_problems" title="poli.tests.registry.toy_discrete_problems"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.toy_discrete_problems</span></code></a></p></td>
 <td><p></p></td>
 </tr>
 </tbody>

_autosummary/poli.tests.registry.proteins.html

@@ -724,6 +724,21 @@ <h1>poli.tests.registry.proteins</h1>
 <col style="width: 90%" />
 </colgroup>
 <tbody>
+<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.registry.proteins.test_foldx.html#module-poli.tests.registry.proteins.test_foldx" title="poli.tests.registry.proteins.test_foldx"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.proteins.test_foldx</span></code></a></p></td>
+<td><p></p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="poli.tests.registry.proteins.test_foldx_rfp_lambo.html#module-poli.tests.registry.proteins.test_foldx_rfp_lambo" title="poli.tests.registry.proteins.test_foldx_rfp_lambo"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.proteins.test_foldx_rfp_lambo</span></code></a></p></td>
+<td><p></p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.registry.proteins.test_rasp.html#module-poli.tests.registry.proteins.test_rasp" title="poli.tests.registry.proteins.test_rasp"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.proteins.test_rasp</span></code></a></p></td>
+<td><p></p></td>
+</tr>
+<tr class="row-even"><td><p><a class="reference internal" href="poli.tests.registry.proteins.test_rmf.html#module-poli.tests.registry.proteins.test_rmf" title="poli.tests.registry.proteins.test_rmf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.proteins.test_rmf</span></code></a></p></td>
+<td><p></p></td>
+</tr>
+<tr class="row-odd"><td><p><a class="reference internal" href="poli.tests.registry.proteins.test_rosetta.html#module-poli.tests.registry.proteins.test_rosetta" title="poli.tests.registry.proteins.test_rosetta"><code class="xref py py-obj docutils literal notranslate"><span class="pre">poli.tests.registry.proteins.test_rosetta</span></code></a></p></td>
+<td><p></p></td>
+</tr>
 </tbody>
 </table>
 </section>

_autosummary/poli.tests.registry.proteins.test_foldx.html

@@ -127,8 +127,6 @@
 
 
 
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                 <article class="bd-article">
 
-  <section id="poli-tests-registry-proteins-test-foldx">
-<h1>poli.tests.registry.proteins.test_foldx<a class="headerlink" href="#poli-tests-registry-proteins-test-foldx" title="Permalink to this heading">#</a></h1>
+  <section id="module-poli.tests.registry.proteins.test_foldx">
+<span id="poli-tests-registry-proteins-test-foldx"></span><h1>poli.tests.registry.proteins.test_foldx<a class="headerlink" href="#module-poli.tests.registry.proteins.test_foldx" title="Permalink to this heading">#</a></h1>
 </section>
 
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_autosummary/poli.tests.registry.proteins.test_foldx_rfp_lambo.html

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@@ -717,8 +715,8 @@ <h1>poli.tests.registry.proteins.test_foldx_rfp_lambo</h1>
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                 <article class="bd-article">
 
-  <section id="poli-tests-registry-proteins-test-foldx-rfp-lambo">
-<h1>poli.tests.registry.proteins.test_foldx_rfp_lambo<a class="headerlink" href="#poli-tests-registry-proteins-test-foldx-rfp-lambo" title="Permalink to this heading">#</a></h1>
+  <section id="module-poli.tests.registry.proteins.test_foldx_rfp_lambo">
+<span id="poli-tests-registry-proteins-test-foldx-rfp-lambo"></span><h1>poli.tests.registry.proteins.test_foldx_rfp_lambo<a class="headerlink" href="#module-poli.tests.registry.proteins.test_foldx_rfp_lambo" title="Permalink to this heading">#</a></h1>
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_autosummary/poli.tests.registry.proteins.test_rasp.html

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-  <section id="poli-tests-registry-proteins-test-rasp">
-<h1>poli.tests.registry.proteins.test_rasp<a class="headerlink" href="#poli-tests-registry-proteins-test-rasp" title="Permalink to this heading">#</a></h1>
+  <section id="module-poli.tests.registry.proteins.test_rasp">
+<span id="poli-tests-registry-proteins-test-rasp"></span><h1>poli.tests.registry.proteins.test_rasp<a class="headerlink" href="#module-poli.tests.registry.proteins.test_rasp" title="Permalink to this heading">#</a></h1>
 </section>
 
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