The file containing all utility functions that are required to run the scripts can be found here: Utility Functions File
The file containing the gene symbol mapping (mapping all gene symbols to up-to-date human symbols) can be found here: Gene Symbol Mapping File
The file containing the gene-ID-to-symbol mappings can be found here: Gene ID to Symbol Mapping File
Resources: 94
Datasets: 210
| Resource | Data Set | Genes | Attributes | Statistically Significant Associations | In Enrichr/Harmonizome | Processing Script |
|---|---|---|---|---|---|---|
| ARCHS4 | Human Cell Line | 23956 | 127 | 608457 | Enrichr | ARCHS4 HCL Script |
| ARCHS4 | Human Tissue | 23169 | 108 | 500364 | Enrichr | ARCHS4 HT Script |
| ARCHS4 | Human Kinase | 17201 | 498 | 140739 | Enrichr | ARCHS4 HK Script |
| ARCHS4 | Human Transcription Factors | 21917 | 1724 | 470861 | Enrichr | ARCHS4 HTF Script |
| ARCHS4 | IDG Focused Genes | 18020 | 352 | 95958 | Enrichr | ARCHS4 IDG Script |
| Achilles | Achilles | 12279 | 216 | 2652264 | Enrichr,Harmonizome | Achilles Script |
| Allen Brain Atlas | Adult Human Brain (RNA-Sequencing) | 18629 | 100 | 92925 | ABA-AHB-RS Script | |
| Allen Brain Atlas | Adult Human Brain (microarray) | 17979 | 414 | 1115464 | Harmonizome | ABA-AHB-MA Script |
| Allen Brain Atlas | Adult Mouse Brain (RNA-Sequencing) | 14248 | 2170 | 3091165 | Harmonizome | ABA-AMB-RS Script |
| Allen Brain Atlas | Aging Human Brain (RNA-Sequencing) Dementia TBI - Tissue | 27858 | 32 | 55716 | ABA-AB-D-TBI Script | |
| Allen Brain Atlas | Aging Human Brain (RNA-Sequencing) No Disease | 28206 | 40 | 56388 | ABA-AB-NS Script | |
| Allen Brain Atlas | Developing Human Brain (RNA-Sequencing) Age | 22411 | 31 | 44822 | ABA-DB-RS-A Script | |
| Allen Brain Atlas | Developing Human Brain (RNA-Sequencing) Sample | 15072 | 524 | 1183125 | Harmonizome | ABA-DB-RS-S Script |
| Allen Brain Atlas | Developing Human Brain (RNA-Sequencing) Tissue | 22411 | 26 | 44822 | ABA-DB-RS-T Script | |
| Allen Brain Atlas | Developing Human Brain (microarray) Age | 16827 | 27 | 27015 | ABA-DB-MA-A Script | |
| Allen Brain Atlas | Developing Human Brain (microarray) Sample | 17237 | 492 | 1270929 | Harmonizome | ABA-DB-MA-S Script |
| Allen Brain Atlas | Developing Human Brain (microarray) Tissue | 16827 | 26 | 33653 | ABA-DB-MA-T Script | |
| Allen Brain Atlas | Prenatal Human Brain (microarray) Sample | 19281 | 1198 | 1156878 | ABA-P-S Script | |
| Allen Brain Atlas | Prenatal Human Brain (microarray) Tissue | 18947 | 516 | 1464840 | Harmonizome | ABA-P-T Script |
| Biocarta | Pathways | 1397 | 254 | 4509 | Enrichr,Harmonizome | Biocarta Script |
| BioGPS | Cell Line | 12628 | 93 | 172238 | Harmonizome | BGPS-CL Script |
| BioGPS | Human Cell Type and Tissue | 16379 | 84 | 205445 | Harmonizome | BGPS-HT Script |
| BioGPS | Mouse Cell Type and Tissue | 15437 | 74 | 170878 | Harmonizome | BGPS-MT Script |
| BioPlanet | ABCA transporters in lipid homeostasis | 9813 | 1510 | Enrichr | BioPlanet Scripts | |
| BioPlex | BioPlex | 10271 | 3915 | 111694 | Enrichr | BPLX Script |
| bgee | Human Sample | 34668 | 1077 | 14983142 | BHS Script | |
| bgee | Human Developmental Stage | 34668 | 33 | 603839 | BHDS Script | |
| bgee | Human Anatomical Entity | 34668 | 308 | 4308050 | BHAE Script | |
| bgee | Mouse Sample | 16289 | 10797 | 9141706 | BMS Script | |
| bgee | Mouse Developmental Stage | 16289 | 58 | 660778 | BMDS Script | |
| bgee | Mouse Anatomical Entity | 16289 | 3142 | 3163055 | BMAE Script | |
| bgee | Rat Sample | 15799 | 11 | 139136 | BRS Script | |
| bgee | Rat Developmental Stage | 15799 | 2 | 22100 | BRDS Script | |
| bgee | Rat Anatomical Entity | 15799 | 10 | 132835 | BRAE Script | |
| CCLE | Cell Line CNV Profiles | 23261 | 1040 | 1144858 | Harmonizome | CCLE CNV Script |
| CCLE | Cell Line Gene Expression Profiles | 18022 | 1035 | 749551 | Enrichr,Harmonizome | CCLE Script |
| CCLE | Cell Line Gene Mutation Profiles | 1667 | 904 | 105921 | Harmonizome | CCLE Mut Script |
| CCLE | Cell Line Proteomics | 8959 | 375 | 122408 | Enrichr,Harmonizome | CCLE Prot Script |
| CellMarker | Gene-Cell Type Associations | 13607 | 7217 | 65978 | Enrichr,Harmonizome | CellMarker Script |
| ChEA | Transcription Factor Targets 2014 | 21240 | 353 | 447756 | Enrichr,Harmonizome | ChEA 14 Script |
| ChEA | Transcription Factor Targets 2015 | 21220 | 199 | 386625 | Enrichr,Harmonizome | ChEA 15 Script |
| ChEA | Transcription Factor Targets 2022 | 17962 | 757 | 917047 | Enrichr,Harmonizome | ChEA 22 Script |
| Chip Atlas | Chip Atlas | 18539 | 963 | 1361218 | CHPATLS Script | |
| ClinVar | ClinVar | 2458 | 3291 | 3638 | Enrichr,Harmonizome | ClinVar Script |
| CMAP | CMAP | 12148 | 6100 | 1201897 | Enrichr,Harmonizome | CMAP Script |
| CORUM | CORUM | 2799 | 2075 | 9015 | Enrichr,Harmonizome | CORUM Script |
| CTD | Gene Chemical Interactions | 11125 | 9516 | 124344 | Harmonizome | CTD-GCI Script |
| CTD | Gene Disease Interactions | 17252 | 5218 | 888474 | Harmonizome | CTD-GDI Script |
| dbGAP | dbGAP | 5668 | 510 | 12769 | Enrichr,Harmonizome | dbGAP Script |
| DeepCoverMOA | Drug Mechanisms of Action | 7742 | 874 | 173741 | Enrichr,Harmonizome | DeepCoverMOA Script |
| DepMap | CRISPR Gene Dependency | 15946 | 1095 | 697098 | Enrichr,Harmonizome | DepMap CRISPR Script |
| DEPOD | Substrates of Phosphatases | 293 | 112 | 819 | Harmonizome | DEPOD Script |
| DisGeNET | Gene-Disease Associations | 15960 | 15709 | 652358 | Enrichr,Harmonizome | DisGeNET D Script |
| DisGeNET | Gene-Phenotype Associations | 14002 | 6832 | 196561 | Harmonizome | DisGeNET P Script |
| Drugbank | Drug Carrier | 61 | 270 | 352 | DRGBNK-DC Script | |
| Drugbank | Drug Enzyme | 261 | 869 | 2429 | DRGBNK-DE Script | |
| Drugbank | Drug Target | 2368 | 4928 | 15261 | Harmonizome | DRGBNK-DT Script |
| Drugbank | Drug Transporter | 154 | 609 | 1784 | DRGBNK-DTRS Script | |
| DSigDB | Computational Drug Signatures | 18215 | 15819 | 293199 | DSigDB-CDS Script | |
| DSigDB | FDA Approved Drugs | 1279 | 1205 | 12571 | DSigDB-FAD Script | |
| DSigDB | Kinase Inhibitors | 404 | 1150 | 16240 | DSigDB-KI Script | |
| DSigDB | Perturbagen Signatures | 10933 | 1163 | 158860 | DSigDB-PS Script | |
| ENCODE | Histone Modification Site Profiles | 22004 | 435 | 4453880 | Enrichr,Harmonizome | ENCODE-HM SCript |
| ENCODE | Transcription Factors | 22449 | 181 | 1651393 | Enrichr,Harmonizome | ENCODE-TF Script |
| ENCODE | Transcription Factors - Binding Sites | 22467 | 1679 | 8803414 | Harmonizome | ENCODE-TF-BS Script |
| ESCAPE | ESCAPE | 16645 | 228 | 212441 | Enrichr,Harmonizome | ESCAPE Script |
| GAD | Gene-Disease Associations | 10697 | 12774 | 74928 | Harmonizome | GAD Script |
| GAD | High Level Gene-Disease Associations | 8013 | 18 | 28182 | Harmonizome | HL-GAD Script |
| GDSC | Cell Line Gene Expression Profiles | 11704 | 624 | 280242 | Harmonizome | GDSC Script |
| GeneRIF | GeneRIF | 15201 | 91042 | 2549478 | Harmonizome | GeneRIF Script |
| GeneSigDB | GeneSigDB | 19508 | 3515 | 416256 | Enrichr,Harmonizome | GeneSigDB Script |
| GEO | Diseases | 18516 | 233 | 139800 | Enrichr,Harmonizome | GEO Disease Script |
| GEO | Gene perturbations | 21050 | 739 | 348486 | Enrichr,Harmonizome | GEO Gene Script |
| GEO | Kinase perturbations | 19788 | 285 | 171000 | Enrichr,Harmonizome | GEO Kinase Script |
| GEO | Small Molecules | 21332 | 415 | 318502 | Enrichr,Harmonizome | GEO SM Script |
| GEO | Transcription Factor Perturbations | 19279 | 154 | 150869 | Enrichr,Harmonizome | GEO TF SCript |
| GEO | Viruses | 19778 | 366 | 222662 | Enrichr,Harmonizome | GEO Virus Script |
| GlyGen | Glycosylated Proteins | 2231 | 1910 | 20486 | Enrichr,Harmonizome | GlyGen Script |
| GO | Biological Processes 2015 | 15717 | 13212 | 969303 | Enrichr,Harmonizome | GO-BP Script |
| GO | Biological Processes 2023 | 14811 | 12318 | 198050 | Enrichr,Harmonizome | GO-BP-23 Script |
| GO | Cellular Components 2015 | 16757 | 1547 | 258969 | Enrichr,Harmonizome | GO-CC Script |
| GO | Cellular Components 2023 | 11089 | 926 | 41883 | Enrichr,Harmonizome | GO-CC-23 Script |
| GO | Molecular Functions 2015 | 15777 | 4162 | 223181 | Enrichr,Harmonizome | GO-MF Script |
| GO | Molecular Functions 2023 | 12478 | 3851 | 50339 | Enrichr,Harmonizome | GO-MF-23 Script |
| GTEx | eQTL | 149 | 7815 | 149 | Harmonizome | GTEx eQTL Script |
| GTEx | Sample | 19247 | 2918 | 8421 | Harmonizome | GTEx Sample Script |
| GTEx | Tissues 2015 | 25557 | 29 | 112583 | EnrichrHarmonizome | GTEx Tissue Script |
| GTEx | Tissues 2023 | 17369 | 54 | 108000 | Enrichr,Harmonizome | GTEx Tissue 23 Script |
| GTEx | Tissue-Specific Aging Signaures | 10050 | 86 | 26267 | Enrichr,Harmonizome | GTEx AS Script |
| Guide to Pharmacology | Chemical Ligands of Receptors | 899 | 4893 | 9376 | Harmonizome | GTP-CLR Tissue Script |
| Guide to Pharmacology | Protein Ligands of Receptors | 187 | 211 | 410 | Harmonizome | GTP-PLR Script |
| GWAS Catalog | GWAS Catalog | 4356 | 1007 | 8253 | Enrichr,Harmonizome | GWAS Catalog Script |
| GWASdb | Disease | 11804 | 585 | 217321 | Harmonizome | GWASdb Disease Script |
| GWASdb | Phenotype | 12487 | 822 | 274553 | Harmonizome | GWASdb Phenotype Script |
| Heiser et al., PNAS, 2011 | Cell Line Gene Expression Profiles | 15144 | 56 | 196872 | Harmonizome | Heiser Script |
| HMDB | Metabolites of Enzymes | 5326 | 22137 | 845725 | Enrichr,Harmonizome | HMDB Script |
| HPA | Cell Line Gene Expression Profiles | 15372 | 43 | 102943 | Harmonizome | HPA CL Script |
| HPA | Tissue Gene Expression Profiles | 17423 | 31 | 81082 | Harmonizome | HPA TG Script |
| HPA | Tissue Protein Expression Profiles | 15704 | 44 | 138576 | Harmonizome | HPA TP Script |
| HPA | Tissue Sample Gene Expression Profiles | 16657 | 121 | 303267 | Harmonizome | HPA TS SCript |
| HPM | Cell Type and Tissue Protein Expression Profiles | 4361 | 4 | 4361 | Harmonizome | HPM SCript |
| hu.MAP | hu.MAP | 7669 | 7669 | 126176 | Enrichr | hu.MAP Script |
| HPO | Human Phenotype Ontology | 3158 | 6842 | 304995 | Enrichr,Harmonizome | HPO Script |
| Hub Proteins | PPIs | 9362 | 289 | 58320 | Enrichr,Harmonizome | Hub Proteins Script |
| HuBMAP | ASCT+B Annotations | 1532 | 1319 | 5279 | Harmonizome | ASCT+B Script |
| HuBMAP | Azimuth Cell Type Annotations | 3560 | 1426 | 13757 | Harmonizome | Azimuth Script |
| HuGE Navigator | Gene Phenotype Associations | 12047 | 2752 | 141789 | Harmonizome | HuGE Navigator Script |
| HumanCyc | Pathways | 932 | 286 | 1839 | Enrichr,Harmonizome | HumanCyc Script |
| IMPC | Knockout Mouse Phenotypes | 6763 | 667 | 36451 | Enrichr,Harmonizome | KOMP Script |
| InterPro | Predicted Protein Domain Annotations | 18002 | 11015 | 62614 | Enrichr,Harmonizome | InterPro Script |
| Jaspar | Predicted Transcription Factor Targets | 21372 | 111 | 148061 | Harmonizome | Jaspar Script |
| Jensen Lab COMPARRTMENTS | Curated Protein Localization Evidence Scores | 16736 | 1463 | 328722 | Enrichr,Harmonizome | JL-C-CU Script |
| Jensen Lab COMPARRTMENTS | Experimental Protein Localization Evidence Scores | 6495 | 59 | 91061 | Enrichr,Harmonizome | JL-C-EX Script |
| Jensen Lab COMPARRTMENTS | Text-mining Protein Localization Evidence Scores | 14375 | 2081 | 546634 | EnrichrHarmonizome | JL-C-TM Script |
| Jensen Lab DISEASES | Curated Gene-Disease Association Evidence Scores | 2252 | 770 | 18144 | Enrichr,Harmonizome | JL-D-CU Script |
| Jensen Lab DISEASES | Experimental Gene-Disease Association Evidence Scores | 4055 | 350 | 35164 | EnrichrHarmonizome | JL-D-EX Script |
| Jensen Lab DISEASES | Text-mining Gene-Disease Association Evidence Scores | 1509 | 4628 | 832618 | Enrichr,Harmonizome | JL-D-TM Script |
| Jensen Lab TISSUES | Curated Tissue Protein Expression Evidence Scores | 16215 | 643 | 357442 | Enrichr,Harmonizome | JL-T-CU Script |
| Jensen Lab TISSUES | Experimental Tissue Protein Expression Evidence Scores | 15505 | 243 | 274154 | Enrichr,Harmonizome | JL-T-EX Script |
| Jensen Lab TISSUES | Text-mining Tissue Protein Expression Evidence Scores | 16184 | 4187 | 1836577 | Enrichr,Harmonizome | JL-T-TM Script |
| KEA | Substrates of Kinases | 3406 | 457 | 12161 | Enrichr,Harmonizome | KEA Script |
| KEGG | Pathways | 3947 | 200 | 9324 | Enrichr,Harmonizome | KEGG Script |
| Kinase Library | Serine Threonine Kinome Atlas | 5046 | 303 | 303000 | Enrichr,Harmonizome | KL-ST Script |
| Kinase Library | Tyrosine Kinome Atlas | 1457 | 93 | 9300 | Enrichr,Harmonizome | KL-T Script |
| Klijn et al. Nat. Biotechnol. 2015 | Cell Line Gene CNV Profiles | 24917 | 668 | 2495455 | Harmonizome | Klijn CNV Script |
| Klijn et al. Nat. Biotechnol. 2015 | Cell Line Gene Expression Profiles | 13942 | 650 | 1357824 | Harmonizome | Klijn Expr Script |
| Klijn et al. Nat. Biotechnol. 2015 | Cell Line Gene Mutation Profiles | 14367 | 676 | 133818 | Harmonizome | Klijn Mut Script |
| KnockTF | Gene Expression Profiles with Transcription Factor Perturbations | 17964 | 566 | 105586 | Harmonizome | KnockTF Script |
| LINCS Kinativ | Kinase Inhibitor Bioactivity Profiles | 102 | 23 | 149 | Harmonizome | Kinativ Script |
| LINCS KinomeScan | Kinase Inhibitor Targets | 277 | 71 | 2057 | Enrichr,Harmonizome | KinomeScan Script |
| LINCS L1000 CMAP | Signatures of Differentially Expressed Genes for Small Molecules | 8347 | 30970 | 4184199 | Enrichr,Harmonizome | L1000 Chem Script |
| LINCS L1000 CMAP | CRISPR Knockout Consensus Signatures | 9551 | 5049 | 2517262 | Enrichr,Harmonizome | L1000 CRISPR CS Script |
| LINCS L1000 CMAP | Chemical Perturbation Consensus Signatures | 12126 | 23913 | 5086167 | Enrichr,Harmonizome | L1000 Chem CS Script |
| LOCATE | Curated Protein Localization Annotations | 9639 | 78 | 79181 | Harmonizome | LOCATE Cur Script |
| LOCATE | Predicted Protein Localization Annotations | 19744 | 24 | 154683 | Harmonizome | LOCATE Pred Script |
| MGI | Mouse Phenotype Associations 2015 | 7798 | 8579 | 466673 | Enrichr,Harmonizome | MGI 15 Script |
| MGI | Mouse Phenotype Associations 2023 | 12894 | 10234 | 201654 | Enrichr,Harmonizome | MGI 23 Script |
| miRTarBase | miRTarBase | 12086 | 596 | 37415 | Enrichr,Harmonizome | miRTarBase Script |
| MotifMap | Predicted Transcription Factor Targets | 20429 | 329 | 158770 | Harmonizome | MotifMap Script |
| MoTrPAC | Rat Endurance Exercise Training | 8833 | 160 | 22075 | Enrichr,Harmonizome | MoTrPAC Script |
| MSigDB | Cancer Gene Co-expression Modules | 4869 | 356 | 41327 | Enrichr,Harmonizome | MSigDB COMP Script |
| MSigDB | Signatures of DEGs for Cancer Gene Perturbations | 10764 | 90 | 29967 | Enrichr,Harmonizome | MSigDB GP Script |
| MW | Enzyme Metabolite Associations | 1050 | 734 | 4921 | Harmonizome | MW Script |
| NURSA | PPIs | 1127 | 1127 | 4258 | Harmonizome | NURSA PPI Script |
| NURSA | Protein Complexes | 9783 | 1796 | 280542 | Enrichr,Harmonizome | NURSA Complex Script |
| OMIM | Gene-Disease Associations | 4552 | 6175 | 6666 | Enrichr,Harmonizome | OMIM Script |
| PANTHER | Pathways | 1962 | 145 | 4255 | Enrichr,Harmonizome | PANTHER Script |
| Pathway Commons | Protein-Protein Interactions | 16291 | 18511 | 1125042 | Harmonizome | PCPPI Script |
| Pathway Commons | Pathways | 11164 | 51319 | 1257932 | PCP Script | |
| PFOCR | Pathway Figure Associations 2023 | 13173 | 35464 | 307416 | Enrichr,Harmonizome | PFOCR 23 Script |
| PFOCR | Pathway Figure Associations 2024 | 14162 | 54337 | 445404 | Enrichr,Harmonizome | PFOCR 24 Script |
| PheWeb | PheWeb | 9116 | 1161 | Enrichr | PheWeb Scripts | |
| Phosphosite Textmining | Biological Term Annotations | 2857 | 882 | 148171 | Harmonizome | Phosphosite TM Script |
| PhosphoSitePlus | Substrestes of Kinases | 2447 | 359 | 6013 | Harmonizome | PSP Kinase Script |
| PhosphoSitePlus | Phosphosite-Disease Associations | 212 | 140 | 356 | Harmonizome | PSP Disease Script |
| PID | Pathways | 2510 | 223 | 8027 | Harmonizome | PID Script |
| ProteomicsDB | Cell Type and Tissue Protein Expression Profiles | 2776 | 53 | 21921 | Enrichr,Harmonizome | Proteomics DB Script |
| Reactome | Pathways 2014 | 7535 | 1638 | 83680 | Enrichr,Harmonizome | Reactome 14 Script |
| Reactome | Pathways 2024 | 11101 | 2709 | 125313 | Enrichr,Harmonizome | Reactome 24 Script |
| Roadmap Epigenomics | Cell and Tissue DNA Methylation | 13690 | 24 | 49514 | Harmonizome | Roadmap DNA Script |
| Roadmap Epigenomics | Cell and Tissue Expression | 12824 | 57 | 109318 | Harmonizome | Roadmap Epigenomics Script |
| Roadmap Epigenomics | Histone Modification Site Profiles | 21031 | 383 | 895131 | Enrichr,Harmonizome | Roadmap HM Script |
| Sanger Dependency Map | Cancer Cell Line Proteomics | 8087 | 949 | 186983 | Harmonizome | Sanger Script |
| SILAC Phosphoproteomics | Signatures of Differentially Phosphorylated Proteins for Drugs | 2770 | 23 | 5808 | Enrichr,Harmonizome | SILAC Drug Script |
| SILAC Phosphoproteomics | Signatures of Differentially Phosphorylated Proteins for Gene Perturbations | 203 | 10 | 840 | Enrichr,Harmonizome | SILAC Gene Script |
| SILAC Phosphoproteomics | Signatures of Differentially Phosphorylated Proteins for Protein Ligands | 2022 | 9 | 5439 | Enrichr,Harmonizome | SILAC Protein Script |
| SynGO | Synaptic Gene Anntoations | 1593 | 267 | 3906 | Enrichr,Harmonizome | SynGO Script |
| Tabula Sapiens | Gene-Cell Associations | 8184 | 469 | 46900 | Enrichr,Harmonizome | Tabula Sapiens Script |
| TargetScan | Predicted Conserved microRNA Targets | 14923 | 1537 | 513997 | Enrichr,Harmonizome | TargetScanHuman Script |
| TargetScan | Predicted Nonconserved microRNA Targets | 18046 | 1539 | 627926 | Enrichr,Harmonizome | TargetScanHuman Script |
| TCGA | Signatures of Differentially Expressed Genes for Tumors | 19791 | 5904 | 4366695 | Harmonizome | TCGA Script |
| TCGA | Adrenocortical Carcinoma | 18423 | 79 | 72970 | TCGA-ACC Script | |
| TCGA | Bladder Urothelial Carcinoma | 18549 | 430 | 398197 | TCGA-BLCA Script | |
| TCGA | Brain Lower Grade Glioma | 18480 | 530 | 489769 | TCGA-LGG Script | |
| TCGA | Breast Invasive Carcinoma | 18511 | 1215 | 1124480 | TCGA-BRCA Script | |
| TCGA | Cervical squamous cell carcinoma and endocervical adenocarcinoma | 18478 | 309 | 284538 | TCGA-CESC Script | |
| TCGA | Cholangiocarcinoma | 18589 | 45 | 41743 | TCGA-CHOL Script | |
| TCGA | Colon Adenocarcinoma | 18340 | 501 | 459393 | TCGA-COAD Script | |
| TCGA | Esophageal Carcinoma | 18875 | 198 | 186087 | TCGA-ESCA Script | |
| TCGA | Glioblastoma Multiforme | 18471 | 173 | 159910 | TCGA-GBM Script | |
| TCGA | Head and Neck Squamous Cell Carcinoma | 18648 | 566 | 527943 | TCGA-HNSC Script | |
| TCGA | Kidney Chromophobe | 18540 | 91 | 84676 | TCGA-KICH Script | |
| TCGA | Kidney Renal Clear Cell Carcinoma | 18665 | 606 | 565628 | TCGA-KIRC Script | |
| TCGA | Kidney Renal Papillary Cell Carcinoma | 18546 | 323 | 299781 | TCGA-KIRP Script | |
| TCGA | Liver Hepatocellular Carcinoma | 18339 | 423 | 387737 | TCGA-LIHC Script | |
| TCGA | Lung Adenocarcinoma | 18508 | 577 | 533911 | TCGA-LUAD Script | |
| TCGA | Lung Squamous Cell Carcinoma | 18608 | 552 | 513287 | TCGA-LUSC Script | |
| TCGA | Lymphoid Neoplasm Diffuse Large B-cell Lymphoma | 18967 | 48 | 42973 | TCGA-DLBC Script | |
| TCGA | Mesothelioma | 18545 | 87 | 81072 | TCGA-MESO Script | |
| TCGA | Ovarian Serous Cystadenocarcinoma | 18621 | 429 | 399505 | TCGA-OV Script | |
| TCGA | Pancreatic Adenocarcinoma | 18493 | 183 | 169642 | TCGA-PAAD Script | |
| TCGA | Pheochromocytoma and Paraganglioma | 18370 | 187 | 172133 | TCGA-PCPG Script | |
| TCGA | Prostate Adenocarcinoma | 18528 | 550 | 509464 | TCGA-PRAD Script | |
| TCGA | Rectum Adenocarcinoma | 18335 | 177 | 162528 | TCGA-READ Script | |
| TCGA | Sarcoma | 18584 | 265 | 245886 | TCGA-SARC Script | |
| TCGA | Skin Cutaneous Melanoma | 18612 | 473 | 439949 | TCGA-SKCM Script | |
| TCGA | Stomach Adenocarcinoma | 18917 | 453 | 428467 | TCGA-STAD Script | |
| TCGA | Testicular Germ Cell Tumors | 18742 | 156 | 145048 | TCGA-TGCT Script | |
| TCGA | Thymoma | 18514 | 122 | 112695 | TCGA-THYM Script | |
| TCGA | Thyroid Carcinoma | 18371 | 572 | 525419 | TCGA-THCA Script | |
| TCGA | Uterine Carcinosarcoma | 18821 | 57 | 56384 | TCGA-UCS Script | |
| TCGA | Uterine Corpus Endometrial Carcinoma | 18689 | 581 | 542785 | TCGA-UCEC Script | |
| TCGA | Uveal Melanoma | 18136 | 80 | 73121 | TCGA-UVM Script | |
| The Human Protein Atlas | Normal Tissue (immunohistochemisty) | 9490 | 108 | 117708 | THPA-NT-I Script | |
| UK BioBank | MedicationCategory-Gene Associations | 1212 | 20 | 2338 | Enrichr, | UKBioBankGWAS Script |
| Virus MINT | Protein-Viral Protein Interactions | 706 | 185 | 1140 | Harmonizome | VM PPI Script |
| Virus MINT | Protein-Virus Interactions | 706 | 68 | 1036 | Enrichr,Harmonizome | Virus MINT Script |
| WikiPathways | WikiPathways Pathways 2014 | 6093 | 427 | 22242 | Enrichr,Harmonizome | WikiPathways 14 Script |
| WikiPathways | WikiPathways Pathaways 2024 | 8274 | 880 | 35588 | Enrichr,Harmonizome | WikiPathways 2024 Script |