Add a tides test case for the VR45to5 mesh #802
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Testing The mesh generated looks like: Land ice draft is included in the init step Bathymetric slopes and buoyancy frequency climatology are calculated/interpolated in the init step for topographic wave drag parameterizations: The harmonic constituents are compared against TPXO9 in the analysis step: |
| # from skimage.filters.rank import median, percentile | ||
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| class VRTidesMesh(SphericalBaseStep): |
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This should probably inherit from QuasiUniformSphericalMeshStep then I can reuse the setup and run methods (if I refactor the return variables from build_cell_width_lat_lon and the input variables to make_jigsaw_mesh
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If possible, that does seem better. But we would want to avoid updating QuasiUniformSphericalMeshStep if it can be avoided.
| super().__init__(test_case=test_case, name='pixel', | ||
| ntasks=1, min_tasks=1, openmp_threads=1) | ||
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| self.add_input_file( |
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Building these DEM datasets could be done once and cached somewhere, as it's pretty expensive and is typically only redone when GEBCO release a new bathymetry (once per year).
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I'll keep these tools updated in https://github.com/dengwirda/dem for the latest GEBCO etc.
| @@ -4,10 +4,14 @@ config_calendar_type = 'noleap' | |||
| config_pio_num_iotasks = 0 | |||
| config_pio_stride = 1 | |||
| config_time_integrator = 'RK4' | |||
| config_use_mom_del2 = .true. | |||
| config_mom_del2 = 3.333 | |||
| config_use_mom_del4 = .true. | |||
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I didn't do a lot of tuning on the del^k dissipation, so this could be looked at in the future if there's interest.
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Since the model is BTR-only, the following is a simple non-iterative adjustment of the SSH due to ISC pressure.
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Thanks @sbrus89 this runs for me successfully on pm-cpu using E3SM-Project/E3SM#6310. A few things I noticed:
- It looks like the plots show TPXO8 rather than TPXO9?
- It looks like the wave-drag step may be printing quite a bit of output to the logs which could be suppressed? Also some long python loops which may be expensive.
- You may see improved performance if jigsaw is upgraded to a more recent version that runs with multi-threading + accelerated steepest descent.
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Not relevant to this PR specifically, but since the errors in M2 are quite competitive here, I wonder if tuning for other constituents too (RMSE_total: https://gmd.copernicus.org/articles/14/1125/2021/) may make sense in the future, so as not to over fit on M2. |
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Approving based on @sbrus89's testing above. Thank you! It is great to have this published test case in the repository!
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@sbrus89, thanks for the reminder. I'm testing an update to the submodule now. |
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@sbrus89, as I just mentioned on slack, my attempt to update the submodule was not very successful. E3SM-Project/E3SM#6310 seems to be causing segfaults on Chrysalis with Intel and OpenMPI. |
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Almost there, just waiting on #827 |
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@xylar, yes I will do that. Thanks for helping with the submodule update! |
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Following up from a month ago, a reminder to rebase and retest. |
- Run extract_HC in parallel - Add list of constituents to analyze to config file
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@xylar, sorry for the big delay on this. Everything is working for me after the rebase now that I sorted out the issues with the ice shelf cavity culling step. I'm retesting the Icos7 test to make sure it is still working as expected. I'll let you know once I've verified that it is. |
This PR adds the workflow to generate the mesh and initial conditions for the VR45to5 barotropic tides mesh, run the simulation, and perform the global tidal constituent error analysis. It relies on the developments from E3SM-Project/E3SM#6310. This case reproduces the MPAS-Ocean configuration that gives the best deep water M2 RMSE accuracy (3.3 cm compared to TPXO9) to date.
Checklist
api.rst) has any new or modified class, method and/or functions listedE3SM-Projectsubmodule has been updated with relevant E3SM changes