Modified ocean/mesh/remap_topography to allow smoothing
#1408
Workflow file for this run
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| name: CI/CD Build Workflow | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| workflow_dispatch: | |
| env: | |
| CANCEL_OTHERS: false | |
| PATHS_IGNORE: '["**/README.md", "**/docs/**"]' | |
| jobs: | |
| pre-commit-hooks: | |
| name: lint with pre-commit | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 5 | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@master | |
| with: | |
| cancel_others: ${{ env.CANCEL_OTHERS }} | |
| paths_ignore: ${{ env.PATHS_IGNORE }} | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Checkout Code Repository | |
| uses: actions/checkout@v4 | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| id: file_changes | |
| uses: trilom/[email protected] | |
| with: | |
| output: ' ' | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| # Run all pre-commit hooks on all the files. | |
| # Getting only staged files can be tricky in case a new PR is opened | |
| # since the action is run on a branch in detached head state | |
| name: Install and Run Pre-commit | |
| uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --files ${{ steps.file_changes.outputs.files}} | |
| build: | |
| name: test compass - python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/skip-duplicate-actions@master | |
| with: | |
| cancel_others: ${{ env.CANCEL_OTHERS }} | |
| paths_ignore: ${{ env.PATHS_IGNORE }} | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| uses: actions/checkout@v4 | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Cache Conda | |
| uses: actions/cache@v4 | |
| env: | |
| # Increase this value to reset cache if conda-dev-spec.template has not changed in the workflow | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-${{ matrix.python-version }}-conda-${{ env.CACHE_NUMBER }}-${{ | |
| hashFiles('conda/configure_compass_env.py,conda/*,conda/compass_env/*') }} | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Set up Conda Environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: "compass_ci" | |
| miniforge-version: latest | |
| channels: conda-forge,e3sm/label/compass | |
| channel-priority: strict | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Install compass | |
| run: | | |
| git config --global url."https://github.com/".insteadOf "[email protected]:" | |
| ./conda/configure_compass_env.py \ | |
| --env_name compass_test \ | |
| --python=${{ matrix.python-version }} \ | |
| --mpi=mpich \ | |
| --verbose | |
| source load_compass_test_mpich.sh | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Build Sphinx Docs | |
| run: | | |
| source load_compass_test_mpich.sh | |
| cd docs | |
| make html | |
| - if: ${{ steps.skip_check.outputs.should_skip != 'true' }} | |
| name: Run Tests | |
| env: | |
| CHECK_IMAGES: False | |
| run: | | |
| source load_compass_test_mpich.sh | |
| python -c "import compass" | |
| compass list | |
| compass list --machines | |
| compass list --suites | |
| compass list --help | |
| compass setup --help | |
| compass suite --help | |
| compass clean --help | |
| create_compass_load_script --help | |
| pip check |