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Try and not build Boost after https://github.com/MICS-Lab/lincs/actio…
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|---|---|---|
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@@ -30,12 +30,7 @@ jobs: | |
| tar xf boost_*.tar.gz | ||
| rm boost_*.tar.gz | ||
| cd boost_* | ||
| echo "using python : ${{ matrix.python_version }} ;" >tools/build/src/user-config.jam | ||
| ./bootstrap.sh | ||
| ./b2 --with-python python=${{ matrix.python_version }} link=shared variant=release stage | ||
| sudo cp -r boost /usr/local/include | ||
| sudo cp -r stage/lib/* /usr/local/lib | ||
| sudo ldconfig | ||
| - name: Install OR-Tools | ||
| run: | | ||
| cd /home/runner/work | ||
|
|
@@ -68,129 +63,166 @@ jobs: | |
| - name: Check the wheel | ||
| run: twine check dist/*.whl | ||
|
|
||
| build-for-windows: | ||
| runs-on: windows-2019 | ||
| strategy: | ||
| matrix: | ||
| python_version: ['3.8', '3.12'] | ||
| steps: | ||
| - name: Install Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python_version }} | ||
| - name: Install Python packages | ||
| run: pip install build delvewheel twine | ||
| - name: Install CUDA | ||
| uses: Jimver/[email protected] | ||
| id: cuda-toolkit | ||
| with: | ||
| cuda: '12.1.0' | ||
| use-github-cache: false | ||
| use-local-cache: false | ||
| method: network | ||
| # Package names from https://docs.nvidia.com/cuda/cuda-installation-guide-microsoft-windows/index.html#id2 | ||
| sub-packages: '["nvcc", "cudart"]' | ||
| - name: Install MSys2 | ||
| uses: msys2/setup-msys2@v2 | ||
| with: | ||
| update: true | ||
| msystem: UCRT64 | ||
| install: >- | ||
| gzip | ||
| tar | ||
| unzip | ||
| wget | ||
| - name: Install boost | ||
| shell: msys2 {0} | ||
| run: | | ||
| cd /d/a | ||
| wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | ||
| tar xf boost_*.tar.gz | ||
| rm boost_*.tar.gz | ||
| mv boost_* boost | ||
| cd boost | ||
| echo "using python : ${{ matrix.python_version }} ;" >tools/build/src/user-config.jam | ||
| ./bootstrap.bat | ||
| ./b2 --with-python python=${{ matrix.python_version }} link=shared variant=release stage || true | ||
| mkdir -p /d/lincs-deps/include /d/lincs-deps/lib | ||
| cp -r boost /d/lincs-deps/include | ||
| cp -r stage/lib/* /d/lincs-deps/lib | ||
| - name: Install OR-Tools | ||
| shell: msys2 {0} | ||
| run: | | ||
| cd /d/a | ||
| wget https://github.com/google/or-tools/releases/download/v8.2/or-tools_VisualStudio2019-64bit_v8.2.8710.zip | ||
| unzip or-tools_*.zip | ||
| rm or-tools_*.zip | ||
| cd or-tools_* | ||
| cp -r include/* /d/lincs-deps/include | ||
| cp -r lib/* /d/lincs-deps/lib | ||
| # build-for-windows: | ||
| # runs-on: windows-2019 | ||
| # strategy: | ||
| # matrix: | ||
| # python_version: ['3.8', '3.12'] | ||
| # steps: | ||
| # - name: Install Python | ||
| # uses: actions/setup-python@v5 | ||
| # with: | ||
| # python-version: ${{ matrix.python_version }} | ||
| # - name: Install Python packages | ||
| # run: pip install build delvewheel twine | ||
| # - name: Install CUDA | ||
| # uses: Jimver/[email protected] | ||
| # id: cuda-toolkit | ||
| # with: | ||
| # cuda: '12.1.0' | ||
| # use-github-cache: false | ||
| # use-local-cache: false | ||
| # method: network | ||
| # # Package names from https://docs.nvidia.com/cuda/cuda-installation-guide-microsoft-windows/index.html#id2 | ||
| # sub-packages: '["nvcc", "cudart"]' | ||
| # - name: Install MSys2 | ||
| # uses: msys2/setup-msys2@v2 | ||
| # with: | ||
| # update: true | ||
| # msystem: UCRT64 | ||
| # install: >- | ||
| # gzip | ||
| # tar | ||
| # unzip | ||
| # wget | ||
| # - name: Install boost | ||
| # shell: msys2 {0} | ||
| # run: | | ||
| # cd /d/a | ||
| # wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | ||
| # tar xf boost_*.tar.gz | ||
| # rm boost_*.tar.gz | ||
| # mv boost_* boost | ||
| # cd boost | ||
| # echo "using python : ${{ matrix.python_version }} ;" >tools/build/src/user-config.jam | ||
| # ./bootstrap.bat | ||
| # ./b2 --with-python python=${{ matrix.python_version }} link=shared variant=release stage || true | ||
| # mkdir -p /d/lincs-deps/include /d/lincs-deps/lib | ||
| # cp -r boost /d/lincs-deps/include | ||
| # cp -r stage/lib/* /d/lincs-deps/lib | ||
| # - name: Install OR-Tools | ||
| # shell: msys2 {0} | ||
| # run: | | ||
| # cd /d/a | ||
| # wget https://github.com/google/or-tools/releases/download/v8.2/or-tools_VisualStudio2019-64bit_v8.2.8710.zip | ||
| # unzip or-tools_*.zip | ||
| # rm or-tools_*.zip | ||
| # cd or-tools_* | ||
| # cp -r include/* /d/lincs-deps/include | ||
| # cp -r lib/* /d/lincs-deps/lib | ||
|
|
||
| - name: Get the code | ||
| uses: actions/checkout@v4 | ||
| # - name: Get the code | ||
| # uses: actions/checkout@v4 | ||
|
|
||
| - name: Build the wheel | ||
| run: python -m build --wheel --outdir local-dist | ||
| env: | ||
| LINCS_DEV_FORCE_NVCC: "true" | ||
| LINCS_DEV_DEPENDENCIES: d:\lincs-deps | ||
| LINCS_DEV_VC_VERSION: 142 | ||
| - name: Make the wheel machine-independent | ||
| run: delvewheel repair --strip (get-item local-dist\*.whl) --wheel-dir dist --add-path d:\lincs-deps\lib | ||
| - name: Check the wheel | ||
| run: twine check (get-item dist\*.whl) | ||
| # - name: Build the wheel | ||
| # run: python -m build --wheel --outdir local-dist | ||
| # env: | ||
| # LINCS_DEV_FORCE_NVCC: "true" | ||
| # LINCS_DEV_DEPENDENCIES: d:\lincs-deps | ||
| # LINCS_DEV_VC_VERSION: 142 | ||
| # - name: Make the wheel machine-independent | ||
| # run: delvewheel repair --strip (get-item local-dist\*.whl) --wheel-dir dist --add-path d:\lincs-deps\lib | ||
| # - name: Check the wheel | ||
| # run: twine check (get-item dist\*.whl) | ||
|
|
||
| # build-for-macos: | ||
| # runs-on: macos-11 | ||
| # strategy: | ||
| # matrix: | ||
| # python_version: ['3.8', '3.12'] | ||
| # env: | ||
| # MACOSX_DEPLOYMENT_TARGET: 11.0 | ||
| # steps: | ||
| # - name: Install Python | ||
| # uses: actions/setup-python@v5 | ||
| # with: | ||
| # python-version: ${{ matrix.python_version }} | ||
| # - name: Install Python packages | ||
| # run: pip3 install build delocate twine | ||
| # - name: Install OpenMP | ||
| # run: | | ||
| # cd /Users/runner/work | ||
| # mkdir openmp | ||
| # cd openmp | ||
| # wget https://mac.r-project.org/openmp/openmp-10.0.0-darwin17-Release.tar.gz | ||
| # tar xf *.tar.gz | ||
| # sudo cp usr/local/lib/* /usr/local/lib | ||
| # sudo cp usr/local/include/* /usr/local/include | ||
| # - name: Install Boost | ||
| # run: | | ||
| # cd /Users/runner/work | ||
| # wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | ||
| # tar xf boost_*.tar.gz | ||
| # rm boost_*.tar.gz | ||
| # cd boost_* | ||
| # echo "using python : ${{ matrix.python_version }} ;" >tools/build/src/user-config.jam | ||
| # ./bootstrap.sh | ||
| # ./b2 --with-python python=${{ matrix.python_version }} link=shared variant=release stage | ||
| # sudo cp -r boost /usr/local/include | ||
| # sudo cp -r stage/lib/* /usr/local/lib | ||
| # - name: Install OR-Tools | ||
| # run: | | ||
| # cd /Users/runner/work | ||
| # wget https://github.com/google/or-tools/releases/download/v8.2/or-tools_MacOsX-11.2.1_v8.2.8710.tar.gz | ||
| # tar xf or-tools_*.tar.gz | ||
| # rm or-tools_*.tar.gz | ||
| # cd or-tools_* | ||
| # sudo cp -r include/* /usr/local/include | ||
| # sudo cp -r lib/* /usr/local/lib | ||
|
|
||
| build-for-macos: | ||
| runs-on: macos-11 | ||
| # - name: Get the code | ||
| # uses: actions/checkout@v4 | ||
|
|
||
| # - name: Build the wheel | ||
| # run: python3 -m build --wheel --outdir local-dist | ||
| # - name: Make the wheel machine-independent | ||
| # run: delocate-wheel --wheel-dir dist local-dist/*.whl | ||
| # - name: Check the wheel | ||
| # run: twine check dist/*.whl | ||
|
|
||
| check: | ||
| runs-on: ${{ matrix.os }} | ||
| needs: | ||
| - build-for-linux | ||
| # - build-for-windows | ||
| # - build-for-macos | ||
| strategy: | ||
| matrix: | ||
| os: | ||
| - ubuntu-22.04 | ||
| # - windows-2022 | ||
| # - macos-13 | ||
| python_version: ['3.8', '3.12'] | ||
| env: | ||
| MACOSX_DEPLOYMENT_TARGET: 11.0 | ||
| steps: | ||
| - name: Install Python | ||
| uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: ${{ matrix.python_version }} | ||
| - name: Install Python packages | ||
| run: pip3 install build delocate twine | ||
| - name: Install OpenMP | ||
| run: | | ||
| cd /Users/runner/work | ||
| mkdir openmp | ||
| cd openmp | ||
| wget https://mac.r-project.org/openmp/openmp-10.0.0-darwin17-Release.tar.gz | ||
| tar xf *.tar.gz | ||
| sudo cp usr/local/lib/* /usr/local/lib | ||
| sudo cp usr/local/include/* /usr/local/include | ||
| - name: Install Boost | ||
| run: | | ||
| cd /Users/runner/work | ||
| wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | ||
| tar xf boost_*.tar.gz | ||
| rm boost_*.tar.gz | ||
| cd boost_* | ||
| echo "using python : ${{ matrix.python_version }} ;" >tools/build/src/user-config.jam | ||
| ./bootstrap.sh | ||
| ./b2 --with-python python=${{ matrix.python_version }} link=shared variant=release stage | ||
| sudo cp -r boost /usr/local/include | ||
| sudo cp -r stage/lib/* /usr/local/lib | ||
| - name: Install OR-Tools | ||
| run: | | ||
| cd /Users/runner/work | ||
| wget https://github.com/google/or-tools/releases/download/v8.2/or-tools_MacOsX-11.2.1_v8.2.8710.tar.gz | ||
| tar xf or-tools_*.tar.gz | ||
| rm or-tools_*.tar.gz | ||
| cd or-tools_* | ||
| sudo cp -r include/* /usr/local/include | ||
| sudo cp -r lib/* /usr/local/lib | ||
| # DO NOT install any other dependencies, to test that the wheels are self-contained | ||
|
|
||
| - name: Get the code | ||
| uses: actions/checkout@v4 | ||
| - name: Dowload the wheels from GitHub Actions artifacts | ||
| uses: actions/download-artifact@v4 | ||
| with: | ||
| pattern: wheel-dist-${{ matrix.python_version }}-* | ||
| merge-multiple: true | ||
|
|
||
| - name: Build the wheel | ||
| run: python3 -m build --wheel --outdir local-dist | ||
| - name: Make the wheel machine-independent | ||
| run: delocate-wheel --wheel-dir dist local-dist/*.whl | ||
| - name: Check the wheel | ||
| run: twine check dist/*.whl | ||
| - name: Install the wheel | ||
| run: pip${{ matrix.python_version }} install --find-links . --pre lincs | ||
|
|
||
| - name: Run lincs | ||
| run: lincs --help | ||
| - run: lincs generate classification-problem 3 2 --output-problem problem.yml | ||
| - run: lincs generate classification-model problem.yml --output-model model.yml | ||
| - run: lincs generate classified-alternatives problem.yml model.yml 100 --output-alternatives learning-set.csv | ||
| - run: lincs learn classification-model problem.yml learning-set.csv --output-model learned-model.yml | ||
| - run: lincs classification-accuracy problem.yml learned-model.yml learning-set.csv | ||