Distribute release #3
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # WARNING: There is a lot of duplication between .yml workflows because I don't know (yet) how | |
| # to factorize these workflows. Keep things in sync. | |
| name: Distribute release | |
| on: | |
| push: | |
| tags: | |
| - v[0-9]+.[0-9]+.[0-9]+ | |
| jobs: | |
| make-source-dist: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Install dependencies | |
| run: pip3 install build twine | |
| - name: Get the code | |
| uses: actions/checkout@v4 | |
| - name: Build the source distribution | |
| run: python3 -m build --sdist | |
| - name: Check the source distribution | |
| run: twine check dist/* | |
| - name: Upload the source distribution to GitHub Actions artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: source-dist | |
| path: dist | |
| build-for-linux: | |
| runs-on: ubuntu-20.04 | |
| needs: | |
| - make-source-dist | |
| strategy: | |
| matrix: | |
| python_version: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13'] | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| - name: Install Python packages | |
| run: pip${{ matrix.python_version }} install build auditwheel twine Chrones | |
| - name: Install CUDA | |
| run: | | |
| sudo apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/3bf863cc.pub | |
| sudo add-apt-repository "deb https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/ /" | |
| sudo apt-get update | |
| sudo apt-get install --yes --no-install-recommends cuda-cudart-dev-12-4 cuda-nvcc-12-4 | |
| echo "/usr/local/cuda-12.4/bin" >>$GITHUB_PATH | |
| - name: Install Boost | |
| run: | | |
| cd /home/runner/work | |
| wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | |
| tar xf boost_*.tar.gz | |
| rm boost_*.tar.gz | |
| cd boost_* | |
| sudo cp -r boost /usr/local/include | |
| - name: Install OR-Tools | |
| run: | | |
| cd /home/runner/work | |
| wget https://github.com/google/or-tools/releases/download/v9.11/or-tools_amd64_ubuntu-20.04_cpp_v9.11.4210.tar.gz | |
| tar xf or-tools_*.tar.gz | |
| rm or-tools_*.tar.gz | |
| cd or-tools_* | |
| sudo cp -r include/* /usr/local/include | |
| sudo cp -r lib/* /usr/local/lib | |
| sudo ldconfig | |
| - name: Install patchelf | |
| run: | | |
| cd /home/runner/work | |
| mkdir patchelf | |
| cd patchelf | |
| wget https://github.com/NixOS/patchelf/releases/download/0.18.0/patchelf-0.18.0-x86_64.tar.gz | |
| tar xf *.tar.gz | |
| sudo cp bin/patchelf /usr/local/bin | |
| - name: Download the source distribution from GitHub Actions artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: source-dist | |
| - name: Unzip the source distribution | |
| run: | | |
| tar xf *.tar.gz | |
| rm *.tar.gz | |
| - name: Build the wheel | |
| run: python${{ matrix.python_version }} -m build --wheel --outdir local-dist lincs-* | |
| env: | |
| LINCS_DEV_FORCE_NVCC: "true" | |
| LINCS_DEV_FORCE_CHRONES: "true" | |
| - name: Make the wheel machine-independent | |
| run: auditwheel repair --plat manylinux_2_31_x86_64 --strip local-dist/*.whl --wheel-dir dist | |
| - name: Check the wheel | |
| run: twine check dist/*.whl | |
| - name: Upload the wheel to GitHub Actions artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheel-dist-${{ matrix.python_version }}-linux | |
| path: dist | |
| build-for-windows: | |
| runs-on: windows-2022 | |
| needs: | |
| - make-source-dist | |
| strategy: | |
| matrix: | |
| python_version: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13'] | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| - name: Install Python packages | |
| run: pip install build delvewheel twine | |
| - name: Install CUDA | |
| uses: Jimver/[email protected] | |
| id: cuda-toolkit | |
| with: | |
| cuda: '12.4.1' | |
| use-github-cache: false | |
| use-local-cache: false | |
| method: network | |
| # Package names from https://docs.nvidia.com/cuda/cuda-installation-guide-microsoft-windows/index.html#id2 | |
| sub-packages: '["nvcc", "cudart"]' | |
| - name: Install MSys2 | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| msystem: UCRT64 | |
| install: >- | |
| gzip | |
| tar | |
| unzip | |
| wget | |
| - name: Install boost | |
| shell: msys2 {0} | |
| run: | | |
| cd /d/a | |
| wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | |
| tar xf boost_*.tar.gz | |
| rm boost_*.tar.gz | |
| mv boost_* boost | |
| cd boost | |
| mkdir -p /d/lincs-deps/include /d/lincs-deps/lib | |
| cp -r boost /d/lincs-deps/include | |
| - name: Install OR-Tools | |
| shell: msys2 {0} | |
| run: | | |
| cd /d/a | |
| wget https://github.com/google/or-tools/releases/download/v9.11/or-tools_x64_VisualStudio2022_cpp_v9.11.4210.zip | |
| unzip or-tools_*.zip | |
| rm or-tools_*.zip | |
| cd or-tools_* | |
| cp -r include/* /d/lincs-deps/include | |
| cp -r lib/* /d/lincs-deps/lib | |
| - name: Download the source distribution from GitHub Actions artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: source-dist | |
| - name: Unzip the source distribution | |
| shell: msys2 {0} | |
| run: | | |
| tar xf *.tar.gz | |
| rm *.tar.gz | |
| - name: Build the wheel | |
| run: python -m build --wheel --outdir local-dist (get-item lincs-*) | |
| env: | |
| LINCS_DEV_FORCE_NVCC: "true" | |
| LINCS_DEV_DEPENDENCIES: d:\lincs-deps | |
| - name: Make the wheel machine-independent | |
| run: delvewheel repair --strip (get-item local-dist\*.whl) --wheel-dir dist --add-path d:\lincs-deps\lib | |
| - name: Check the wheel | |
| run: twine check (get-item dist\*.whl) | |
| - name: Upload the wheel to GitHub Actions artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheel-dist-${{ matrix.python_version }}-windows | |
| path: dist | |
| build-for-macos: | |
| runs-on: macos-13 | |
| needs: | |
| - make-source-dist | |
| strategy: | |
| matrix: | |
| python_version: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13'] | |
| env: | |
| MACOSX_DEPLOYMENT_TARGET: 12.0 | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| - name: Install Python packages | |
| run: pip3 install build delocate twine | |
| - name: Install OpenMP | |
| run: | | |
| cd /Users/runner/work | |
| mkdir openmp | |
| cd openmp | |
| wget https://mac.r-project.org/openmp/openmp-16.0.4-darwin20-Release.tar.gz | |
| tar xf *.tar.gz | |
| sudo cp usr/local/lib/* /usr/local/lib | |
| sudo cp usr/local/include/* /usr/local/include | |
| - name: Install Boost | |
| run: | | |
| cd /Users/runner/work | |
| wget https://boostorg.jfrog.io/artifactory/main/release/1.82.0/source/boost_1_82_0.tar.gz | |
| tar xf boost_*.tar.gz | |
| rm boost_*.tar.gz | |
| cd boost_* | |
| sudo cp -r boost /usr/local/include | |
| - name: Install OR-Tools | |
| run: | | |
| cd /Users/runner/work | |
| wget https://github.com/google/or-tools/releases/download/v9.11/or-tools_x86_64_macOS-14.6.1_cpp_v9.11.4210.tar.gz | |
| tar xf or-tools_x86_64_*.tar.gz | |
| rm or-tools_x86_64_*.tar.gz | |
| wget https://github.com/google/or-tools/releases/download/v9.11/or-tools_arm64_macOS-14.6.1_cpp_v9.11.4210.tar.gz | |
| tar xf or-tools_arm64_*.tar.gz | |
| rm or-tools_arm64_*.tar.gz | |
| sudo cp -r or-tools_arm64_*/include/* /usr/local/include | |
| lipo or-tools*/lib/libortools.9.11.dylib -output /usr/local/lib/libortools.9.11.dylib -create | |
| cd /usr/local/lib | |
| ln -s libortools.9.11.dylib libortools.9.dylib | |
| ln -s libortools.9.dylib libortools.dylib | |
| - name: Download the source distribution from GitHub Actions artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: source-dist | |
| - name: Unzip the source distribution | |
| run: | | |
| tar xf *.tar.gz | |
| rm *.tar.gz | |
| - name: Build the wheel | |
| run: python3 -m build --wheel --outdir local-dist lincs-* | |
| - name: Make the wheel machine-independent | |
| run: delocate-wheel --wheel-dir dist local-dist/*.whl | |
| - name: Check the wheel | |
| run: twine check dist/*.whl | |
| - name: Upload the wheel to GitHub Actions artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheel-dist-${{ matrix.python_version }}-macos | |
| path: dist | |
| check: | |
| runs-on: ${{ matrix.os }} | |
| needs: | |
| - build-for-linux | |
| - build-for-windows | |
| - build-for-macos | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-20.04 | |
| - ubuntu-22.04 | |
| - ubuntu-24.04 | |
| - windows-2019 | |
| - windows-2022 | |
| - macos-12 | |
| - macos-13 | |
| - macos-14 | |
| - macos-15 | |
| python_version: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13'] | |
| exclude: | |
| # Older Python versions don't build 'universal2' wheels, so they can't run on the M1 runner that run macOS 14 and 15 | |
| - os: macos-14 | |
| python_version: '3.8' | |
| - os: macos-15 | |
| python_version: '3.8' | |
| - os: macos-14 | |
| python_version: '3.9' | |
| - os: macos-15 | |
| python_version: '3.9' | |
| - os: macos-14 | |
| python_version: '3.10' | |
| - os: macos-15 | |
| python_version: '3.10' | |
| steps: | |
| - name: Install Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| # DO NOT install any other dependencies, to test that the wheels are self-contained | |
| - name: Download the wheels from GitHub Actions artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: wheel-dist-${{ matrix.python_version }}-* | |
| merge-multiple: true | |
| - name: Install the wheel | |
| run: pip${{ matrix.python_version }} install --find-links . --pre lincs | |
| - name: Run lincs | |
| run: lincs --help | |
| - run: lincs generate classification-problem 3 2 --output-problem problem.yml | |
| - run: lincs generate classification-model problem.yml --output-model model.yml | |
| - run: lincs generate classified-alternatives problem.yml model.yml 100 --output-alternatives learning-set.csv | |
| - run: lincs learn classification-model problem.yml learning-set.csv --output-model learned-model.yml | |
| - run: lincs classification-accuracy problem.yml learned-model.yml learning-set.csv | |
| publish-on-pypi: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - check | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/lincs | |
| permissions: | |
| id-token: write | |
| steps: | |
| - name: Download the source distribution from GitHub Actions artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: source-dist | |
| path: dist | |
| - name: Download the wheels from GitHub Actions artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: wheel-dist-* | |
| merge-multiple: true | |
| path: dist | |
| - name: Publish all distributions to the Python Package Index | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| packages-dir: dist | |
| verify-metadata: false | |
| verbose: true | |
| publish-on-dockerhub: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - check | |
| steps: | |
| - name: Get the code (just for the Dockerfile) | |
| uses: actions/checkout@v4 | |
| - name: Download the wheels from GitHub Actions artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: wheel-dist-3.13-linux | |
| path: docker | |
| - name: Build the Docker image | |
| run: docker build --pull --no-cache --build-arg lincs_version=$(echo ${{ github.ref_name }} | sed 's/^v//') --tag jacquev6/lincs:$(echo ${{ github.ref_name }} | sed 's/^v//') docker | |
| - run: docker tag jacquev6/lincs:$(echo ${{ github.ref_name }} | sed 's/^v//') jacquev6/lincs:latest | |
| - name: Login into Docker Hub | |
| run: echo "${{ secrets.DOCKER_PASSWORD_JACQUEV6 }}" | docker login -u jacquev6 --password-stdin | |
| - name: Push the Docker image | |
| run: docker push jacquev6/lincs:$(echo ${{ github.ref_name }} | sed 's/^v//') | |
| - run: docker push jacquev6/lincs:latest |